AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g03967 ATGGCTTCTGGGTTGTTATTAGATGCGGATAGAATAAGCAAAGGGAAGAGTAAGTGGGGAGAGGGTAATAAGGTTTACACAAGAAGGTTTAAAAGAATCTCCGGTGCCTCTTCGACCCCGTCTGCCACCCTCACCGCTGAGGTTGTCTCTCTACCAGTTACCAAGTTGGGCGAACCTACGACCCCGAATAACGATCAAACTGTAGGTACGGAACATGCTAATTCGGAAATTCAACAGGTGTCGGCTGTCGTAGAGCCGTCGAATGAGCAACTGGTTGAGAGTCGGGAGGTTACTAGAAACGGGGTGGTGAAACCAGTTGTTGTGGTGGTGGATGGTTTGGTTAAGATTAATTTGAAAGGTGCGAATAAGGATGAAATTGTTGAGCTAATGGGGACGATGAAAGCTGAGCTTGAAAACGTTCGGCGTGTAGCTCAAAAGCTTGAAGATAAAGAAGCCGAGCTAACGGCGTCTTTAAACGTTGGTGTTGGAGGTGATGGTGATGGTGAGGCTTATAATCATTCGCAATATTTGGGCGATGACATGGTTGATAGGAGAGCTTTGTTTAGAGTTAATTCGGAAGTGGGCTCGGTTTCAAATGGCGTTATAAGGCCTTTCCGGCAGTTAAGTGTGTCTGTTGGGAATAACAACCATGGAGTTGGTGAGTTCATGGAGAAAGAGAAGCGAACACCGAAGGCTAACCCGTACTATCAAAGCTCGGAGTTTCTTCTTGGGAAAGACAGATTACCATCGGAAAGCAATAAGAGGCATAAGTCCAACAGTGGAAGGAAGCATAGCAAGGAATCAGATCGTGTCTGGAATCGAACGTTCAAGAGTTGCAACAATTTGTTGCAGAGATTAATGAAGCATAAATTCGGTTGGGTGTTTAACGAGCCGGTTAACGCGAAGATGTTAGGGCTTCATGATTACCATGACATCATTAAACACCCAATGGACTTGGGAACAGTTAAGAGTCGTCTTGCACAGAACTTCTACAAGTCTCCCATGGAGTTCGCAGATGACGTCAGGCTCACGTTCCGTAACGCCATGACGTATAATCCAAAAGGACAAGATGTACACTTGATGGCAGAGCAGTTGTTGAATCTTTTTGAAGAAAGGTGGGCTGTCATCGAATCTGAATTTAATCCGACTTCGAGATACGCAATGATTTACGATCCGAGCACTCCTACTCCCACCTCAAGAAAGGCTCCTCACTTTGCACATGCTCCTTTAATGCTGCAAAGATCGGAATCGGTGAGCGTGCCTGTGGTGAATAGGTCTATATCTGCGCCAACGGGTAGGACACCTGTACCGAAGAAACCTAAAGCTAAGGATCCAAATAAGAGGAACATGACGTATGAAGAGAAGCAAAAACTAAGTACAAATCTACAGAGTTTACCTTCGGAAAAGCTTGACAATATTATCCAGATTATCAAAAAGAACACATCGGTCTCACAACATGATGACGAGATTGAAGTTGATATTGATAGTGTTGATATAGAAACTCTTTGGGAGCTCGATCGGTTTGTTACTAATTATAGAAAGAATTTGAGCAAGCATAAAAGGAAAGCTGCACTTGCTCAACAAGCAAGGGCAGAAGCTCATGATGTCAATCAGACCATGAATCCATCAAAATCAAATCCAGATGATCCAAAAGAAGATAAAATAACAGAGGAGAATACTATTGCTGGTAGACCCGTTGATCAAGGTGAGAGGGGAGGAGATAATGCCACTAGTTCAAGCAGCTCTAGCAGTGATTCTGGATCCTCTTCAAGTGATTCAGATAGTGACAGTTCATCTGAAGATGGGTCAGATGCAGGTCAGTCGCCTAGAAGTTGA 1836 44.12 MASGLLLDADRISKGKSKWGEGNKVYTRRFKRISGASSTPSATLTAEVVSLPVTKLGEPTTPNNDQTVGTEHANSEIQQVSAVVEPSNEQLVESREVTRNGVVKPVVVVVDGLVKINLKGANKDEIVELMGTMKAELENVRRVAQKLEDKEAELTASLNVGVGGDGDGEAYNHSQYLGDDMVDRRALFRVNSEVGSVSNGVIRPFRQLSVSVGNNNHGVGEFMEKEKRTPKANPYYQSSEFLLGKDRLPSESNKRHKSNSGRKHSKESDRVWNRTFKSCNNLLQRLMKHKFGWVFNEPVNAKMLGLHDYHDIIKHPMDLGTVKSRLAQNFYKSPMEFADDVRLTFRNAMTYNPKGQDVHLMAEQLLNLFEERWAVIESEFNPTSRYAMIYDPSTPTPTSRKAPHFAHAPLMLQRSESVSVPVVNRSISAPTGRTPVPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIIQIIKKNTSVSQHDDEIEVDIDSVDIETLWELDRFVTNYRKNLSKHKRKAALAQQARAEAHDVNQTMNPSKSNPDDPKEDKITEENTIAGRPVDQGERGGDNATSSSSSSSDSGSSSSDSDSDSSSEDGSDAGQSPRS 611
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g03967 611 MobiDBLite consensus disorder prediction 546 560 - -
Hean15g03967 611 Coils Coil 130 157 - -
Hean15g03967 611 PANTHER OSJNBA0053K19.4 PROTEIN 35 603 - -
Hean15g03967 611 Gene3D - 443 522 IPR038336 -
Hean15g03967 611 MobiDBLite consensus disorder prediction 56 73 - -
Hean15g03967 611 CDD Bromo-plant1 275 373 IPR037377 -
Hean15g03967 611 Coils Coil 509 529 - -
Hean15g03967 611 MobiDBLite consensus disorder prediction 572 611 - -
Hean15g03967 611 SUPERFAMILY Bromodomain 260 379 IPR036427 GO:0005515(InterPro)
Hean15g03967 611 MobiDBLite consensus disorder prediction 427 450 - -
Hean15g03967 611 MobiDBLite consensus disorder prediction 54 73 - -
Hean15g03967 611 PRINTS Bromodomain signature 306 322 IPR001487 GO:0005515(InterPro)
Hean15g03967 611 PRINTS Bromodomain signature 322 340 IPR001487 GO:0005515(InterPro)
Hean15g03967 611 PRINTS Bromodomain signature 290 303 IPR001487 GO:0005515(InterPro)
Hean15g03967 611 PRINTS Bromodomain signature 340 359 IPR001487 GO:0005515(InterPro)
Hean15g03967 611 SMART bromo-6 268 378 IPR001487 GO:0005515(InterPro)
Hean15g03967 611 Pfam Bromodomain 279 363 IPR001487 GO:0005515(InterPro)
Hean15g03967 611 Pfam Bromodomain extra-terminal - transcription regulation 450 510 IPR027353 -
Hean15g03967 611 MobiDBLite consensus disorder prediction 247 269 - -
Hean15g03967 611 ProSiteProfiles Bromodomain profile. 287 359 IPR001487 GO:0005515(InterPro)
Hean15g03967 611 ProSiteProfiles NET domain profile. 440 520 IPR027353 -
Hean15g03967 611 MobiDBLite consensus disorder prediction 246 269 - -
Hean15g03967 611 Gene3D - 241 387 IPR036427 GO:0005515(InterPro)
Hean15g03967 611 MobiDBLite consensus disorder prediction 521 611 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g03967 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
102591 Hean15g03967 Hean3g02334
402166 Hean11g00926 Hean15g03967
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:153503159 Hean9g01377 Hean-Chr9:81981962 dispersed
Hean Hean-Chr17:167951362 Hean15g03967 Hean-Chr15:153503159 transposed
Hean Hean-Chr11:22569632 Hean15g03967 Hean-Chr15:153503159 wgd
Hean Hean-Chr15:153503159 Hean3g02334 Hean-Chr3:127580480 wgd