AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g03973 ATGCTCTGTCTACCTATACAATCCATTACCCCTCACCCCAAAACACCCTTTGGATCACAAACCCAAGTGCTCAGATTCTTTTCAACAACCAAATTCCTTCATCATCATCATCATCGTAAACATTGGAACAAGATCATTCACAGGAGTGATGGGTACAGTCCTTGTTGTTGTTTGAAGCCAGATACGGGTTTAAGTTGGAGTGAAGAAGAGTTCGATATGGAATTGGGGCGCATGTTGAGGCTGTTGCCGGAGGAGATGCGGCGGAGGGTTAATGAGCATCAGGAACTTCATCAATTGATTGAGGTTGTTATGGATTTGGGGCGGAAACCGCTCGCTCGGTTTCCGTCTGGGGATTTTATGTTGTCGGATGATTTGATCACGGTGGATGATCTTGAACATGCTACTTCGTTGGTAGGTGATTTCGCTATTGATAATCGAGCTGGCATTAGCAGAACTTTACATCGAATAAGTGCCATCAGAAACCGGAAGGGCACAATAATAGGACTAACATGTCGTGTTGGCCGAGCTGTATCAGGAAGTGCAAAGTTATTGCAAGATTTGGTTAAAGACGGAGCTTCTTTATTGCTTATTGGACCTCCAGGAGTAGGAAAAACAACAATTATCAGGGACGTAGCTCGAATGCTTGCAAATGATTATAATAAACGTGTAATGATTGTTGATACTTCAAATGAAATTGGCGGAGACGGTGATATACCACATTCTGGTATAGGTAATGCTCGACGGATGCAAGTTCCTGATGCCGACATGCAACATAAGGTATTAATAGAAGCAGTTGAAAATCATATGCCTCAAGTGATTGTAATCGATGAAATCGGTACAAAACTTGAAGCAGCAGCTGCAAGCACTATTGCACAACGTGGGATTCAGTTAGTTGCAACTGCTCATGGTATTACGATCGAGAATTTAGTAATGAATCCTTCATTGGATATGCTTGTTGGAGGAATACAGAGTGTGACACTAGGAGACGAAGAGGCAAACCGTAGGGGCGTACAGAAATCAGTGCTGGAGAGAAAAGGTCCTTCCACTTTCGATTGTGCGGTTGAGATTATTTCTAGGCTCGAGTTGAGAGTTCACAGCAGTCTCGAAGCAACCGTTGATGCTATTCTTTCTGGCCGTTCCCCGAACTATCAAGTTTGCAAGGGAGTGATAGACGTTACATTACAAAGTGATCCAATTGCATATGAGTCGTTTGTCAAGAAGAGTGTCTCTACAGTCGAAGGAGGCATTCCACAGTGGACCAATGAAAAGCTTACACCCGACAAACACATTTCTAAAGAGTCTCAAAGTGATACGGATACTTCTTATGATAAGCCGCCCTTGTGTTTATTTCTCTATGGCGTCTCGGAGACAACTTCAAGACAAGTATTCAAACACTTAAAGATGGAATCTGCTGTTGAATTTACTGAGAATATTAGTGAAGCAGATGCAATACTTGCATTACTGTCTAAAATCAAGAAAAATTCCCGGATTCAGGCTGCTGCCCACTCTAATGACATACCTATTTATGTCACAAAGACAAGCTCATTGACACAGTTAACAAAGGCCATAGAGGCATTAGTGACTGATTATGATAATGGTTTTGAAGACGTTGAAGATGAATATTCTCAGATAAATGAATCGGAGAAGACTGATGCTTTGGAGGAAGCGAGGATTGCTATTGAACAGGTTGTCATCCCAAAAGGTGAACCTGTAGAATTACTTCCACGGCAATCCAACATTCTGTTGCTCCAGAAGGGTCTAATTCGTAAATATAAGCTACAAGCACAGCGAGTCGGTTCAGAAGCGGATGTAAGGCTTCGTATTTTACCATTTCAAGCTGAAAAACAAGATAAACACGACGCTCACGACGATGATGATGATGATGATGGTGATACTGATGCACTTAATGAGTTGTCTAATGCGAATGGCTCACCCTACCCGGTGAACAGATTACCTTTTCTGCCTGACTAG 1971 42.36 MLCLPIQSITPHPKTPFGSQTQVLRFFSTTKFLHHHHHRKHWNKIIHRSDGYSPCCCLKPDTGLSWSEEEFDMELGRMLRLLPEEMRRRVNEHQELHQLIEVVMDLGRKPLARFPSGDFMLSDDLITVDDLEHATSLVGDFAIDNRAGISRTLHRISAIRNRKGTIIGLTCRVGRAVSGSAKLLQDLVKDGASLLLIGPPGVGKTTIIRDVARMLANDYNKRVMIVDTSNEIGGDGDIPHSGIGNARRMQVPDADMQHKVLIEAVENHMPQVIVIDEIGTKLEAAAASTIAQRGIQLVATAHGITIENLVMNPSLDMLVGGIQSVTLGDEEANRRGVQKSVLERKGPSTFDCAVEIISRLELRVHSSLEATVDAILSGRSPNYQVCKGVIDVTLQSDPIAYESFVKKSVSTVEGGIPQWTNEKLTPDKHISKESQSDTDTSYDKPPLCLFLYGVSETTSRQVFKHLKMESAVEFTENISEADAILALLSKIKKNSRIQAAAHSNDIPIYVTKTSSLTQLTKAIEALVTDYDNGFEDVEDEYSQINESEKTDALEEARIAIEQVVIPKGEPVELLPRQSNILLLQKGLIRKYKLQAQRVGSEADVRLRILPFQAEKQDKHDAHDDDDDDDGDTDALNELSNANGSPYPVNRLPFLPD 656
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g03973 656 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 198 217 - -
Hean15g03973 656 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 555 573 - -
Hean15g03973 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 333 IPR027417 -
Hean15g03973 656 MobiDBLite consensus disorder prediction 425 439 - -
Hean15g03973 656 FunFam uncharacterized protein ycf45 isoform X2 155 372 - -
Hean15g03973 656 CDD R3H-AAA 551 610 IPR034081 -
Hean15g03973 656 Pfam Sporulation stage III, protein AA 166 320 IPR045735 -
Hean15g03973 656 CDD AAA 191 280 - -
Hean15g03973 656 MobiDBLite consensus disorder prediction 614 656 - -
Hean15g03973 656 PANTHER KINASE-RELATED 37 573 - GO:0009507(PANTHER)
Hean15g03973 656 SMART AAA-5 190 321 IPR003593 GO:0016887(InterPro)
Hean15g03973 656 Gene3D - 167 373 IPR027417 -
Hean15g03973 656 MobiDBLite consensus disorder prediction 420 440 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g03973 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:154350630 Hean15g03973 Hean-Chr15:154282167 dispersed
Hean Hean-Chr15:100504865 Hean15g03973 Hean-Chr15:154282167 dispersed