AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g04014 ATGAGTGGATCAAATGGGAAATACCCATCAAGTGATGGAAATGGTGGTGCAAATGGGATCATAAAATACAACAGGAAATGCAGAGATGTTGTGTTTCTTGTTTTTTTCATAGCTTTCTGGGTTGCCATGATTGTTAACTCTAGCTTTGGCTTCAACCAAGGAAACCCATTAAGGCTCAACTTTGGGTTGGATTATAAAGGAAATGTATGTGGAGGCAAACACAAAGATTTTAACCTTGGCGAATTGGAACTGAAATACTATGTTAATCCTAATCAAGTTTATCAAAGTGGATTAAAAAACAGTGGAGTAAAACTGTCTAATGCGCGAACCATATGTTTATTGGATTGCCCGATACCATCGGAAGATTCTTTGAATTGGGTTTGTGATTATCCTGAAGGAGATATTCGTATTTCGTTAGATGATTGGATTGATATGAATTATGATTATTATGCTGACCTTACTCCTGAGTTACGGAACTCTTCTCTTCAACTTCAAGGTCCTTGTTACCCTGTCATTTTTCCAAGCGTAAATGTTTATTGGACTTGCCAATTTATTGATCGTCCATCAAATGTGTCGTTAACACATTGGAAGCAGTTGAATGGGGTAATCATCAATGATGACATGGTCATAGATAAATCTATTCACAACTCCATCAACACACGATCTTCAGTATTGAAGAGATATGTTGCGGATGTTGGAAAATCATGGCCCGTGTTGATTGTGTGTGGAGGACTCTTACCTCTACTTTTGTCAATGATGTGGCTTTTAATGATTCGACATTTTGTAACTGCAATGCCATGGGTTACTGTATTTCTGTTTAATGGCCTCATAATATCAGTCACGATGTTCTACTACATGAAAGCTGGATGGATAGGAAACGATGCTATCTCACCCATCATCGGCGAACATGATCCATACTATCATGTTTCTGCAAGGGAGCAACATCATATCCGTGCAGCTGCTTTTCTCATGACTTGTGTTATGATTGTTGCGGTTCTATCATCTATAGCAATTGTTAGACGGATTCTTATGGCAACCTCAGTACTCAAGGTTGCTGCAAAGGTTATTGGCGAGGTTCATGCTCTAATAATTTTCCCGGTTATACCGTACGCAATCCTCGCAATTTTCTATATGTTTTGGCTATCGGCTGCGCTTAATCTTTTTAGTTCGGGTCAAATAGTCCGCAATGATTGCAACACAAATTGTTGTGCTTATGATCTTAAAGCCAAACGGGTCAGTTGTGATGATTGTTGTGGCTATAGTATCCACTACACGCCGCATATCGCAGCTTCAATTCTATTCCACTTGTTTGGGTGCTATTGGGCTACTCAGTTTATCATAGCATGTTCGTCAACTGTGATTGCTGGTTCCGTAGCTTCATACTATTGGGCTCGCGGGGAATCTTCGGCAAAGATTCCGTTTCTTCCGGTGTTTTCCTCGATGAAGCTACTCATGCGATATAGCCTAGGGTCGGTGGCGATCGGCTCCTTGATTGTATCGTTTGTTGAGTCAACTAGGTTCATACTTGAGGCCATACGCCGGAGACTAAAGGGTGCTGACATCATGCCGGAAAGCTGGATTAAACGGATGATGTTTCATACTTCTCGGTTTTGCATAAACTGCATTGAGTTGACCATAAAATCCGTAAACCGCAATGCATACATTATGATTGCTATAACGGGAAAAGGGTTCTTTAGAGCTTCTGAAATGGCAACTGATTTGATAATTAGTAATATTCTCCGTATAGGCAGAGTAAACGTAATTGGGGACGTTATACTCTATCTTGGAAAGCTGTGTGTGAGTCTTGCAAGTGCACTTTTTGCATTTCTTATGTTGGATACTCATAAATACAAATCATCCCACAACAAGATCACATCCCCATTATTTCCTGTGCTGGCGTGTTGGGGTCTCGGGTATGTGGTGGCTACTCTTTTCTTTGCAGTAGTGGAAATGTCGATCGATACGATCATACTTTCGTATTGCCAGGATGCAGAGGAACACCAAGGGACTGCACATTATGCACCTCCACTTTTAATTGAAACATTTGATGAACAAAATGAGGTGCAAAGAATTGCACAATGA 2082 40.49 MSGSNGKYPSSDGNGGANGIIKYNRKCRDVVFLVFFIAFWVAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFNLGELELKYYVNPNQVYQSGLKNSGVKLSNARTICLLDCPIPSEDSLNWVCDYPEGDIRISLDDWIDMNYDYYADLTPELRNSSLQLQGPCYPVIFPSVNVYWTCQFIDRPSNVSLTHWKQLNGVIINDDMVIDKSIHNSINTRSSVLKRYVADVGKSWPVLIVCGGLLPLLLSMMWLLMIRHFVTAMPWVTVFLFNGLIISVTMFYYMKAGWIGNDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPVIPYAILAIFYMFWLSAALNLFSSGQIVRNDCNTNCCAYDLKAKRVSCDDCCGYSIHYTPHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSAKIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKGADIMPESWIKRMMFHTSRFCINCIELTIKSVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGRVNVIGDVILYLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLACWGLGYVVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEQNEVQRIAQ 693
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g04014 693 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 19 686 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Hean15g04014 693 Pfam Plasma-membrane choline transporter 323 665 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g04014 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
402172 Hean11g00967 Hean15g04014
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:70059656 Hean15g04014 Hean-Chr15:156255277 transposed
Hean Hean-Chr16:148479536 Hean15g04014 Hean-Chr15:156255277 transposed
Hean Hean-Chr11:24571242 Hean15g04014 Hean-Chr15:156255277 wgd