AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean16g00799 ATGTTCTTCCGAATTCCAATCTCTTCATACCACCAGGCCGCCATTGTCATCAACCTCGAGCTTATTCTGAACTCGCTAGGGTTACAAATGGAGAATAAACACAAGCTTAAAATCGCATTCACAGTCACTTTTCTTGCTGTGGCTTCAATTTTACTTGCGAACAAGTTTCGAAAACATCGAAAGCGAAAACAGAACTCAACTTCTTGTTACTTGAAATCGGAAGCAAAACCGCAGCATAATTTCAAGCGTGTGTTAGCGAACAATTCGTATGCTCCGTTCAAGCACCTCAAGCTCGACGAAAATTCTTCGGATTTGCATCCGTATGAATCAGAGATCAAGGCTCTGTTGGAGAAATTACAGCTAGATATTGAGTTTTCTAATGGAAGTATGGATATGAAGATGAGTGATAAGTATGTTTGGGTTGATGATGAATTAAAGTTAAAAGAACTTGTGGAAGTTTTAAGTGAAGAAAGAGTGTTTGCTGTGGATACTGAACAGCATAGCTTACGGTCATTCTTAGGGTTTACAGCTCTTATTCAGATTTCTACTAGAGATGAAGATTATTTGGTGGACACCATTGCTGTTCATGATATTATGGGACTTCTTGGCCCTGTATTTGCCAATCCCAATATCTGCAAGGTGTTCCATGGTGCTGATAATGATGTTATATGGCTACAAAGGGATTTTCATATATATGTTGTAAACTTATTCGACACTGCAAAGGCTTGTGATGTTTTATCAAAACCACAGAGATCATTAGCCTACTTACTTGAAACGTATTGTGGTGTCACCACTAACAAGCTTTACCAGCGTGAAGATTGGCGACAACGTCCGCTACCAATAGATATGGTTGAGTATGCTCGGATGGATGCACACTATTTGCTTTATATTGCAGACTGTCTCGTTTCTGAGCTAAAAAACCAGAAAAACGAAAATTCAGCCACTCTCGATGACGATTTGCATTTTGTTTCTGAGGCCATCCGGCGTTCGAATGCCTTGTGTCTGCAACTCTTCACCAAAGATCTAGAAGCTTCCCCAGGGCAATCTGCTGCTGCTTCTATGATTTCTCGCCACTTAAATGATCATGGGAGTTCTGCAAACAACAGCCAGTTTCAGGATCTTGTTAGACGTCTATGCTGTTGGAGGGATTTGATGGCCCGTATGCATGATGAGAGCCTTAAATACGTACTATCTGATAATGCTATTGTATCTCTAGCTGAAACAGTTCCACTATCTCCAACTGATATCTGCACCACATTATCACAAGCTGATATAGACACAGATTTTCTAAATTCCAATTCTACCCCTCGGTTTCCATCCTCTGTTGTCTCGAGTCATTTGGATGACTTCCCTTACCTCCTCCAAAACGAGACAAACAATCTCGACGATTTATTTCAACTAATTCTCAAAAAGCACATTGGTCCAAACGGTTCTTGTCCTTTTTCACTTTACAACTATGGTTTACTTTCTAAAACCAACATTAAATCTTCAAAGAGATTAGTTACAAAGGCGAGTGGATACAAGTTATCAAAACAAGTTGCTCGCAAGGCTTCTCGAGAGCTGTTTGTTCAGAAGTTCTCTTGCAAATCTCCGGTGTATCATAACTGCAGGATATATGCTAATGATGGAAGATTGTTGTGTTACTGCGATCGAAGGAAGCTAGAATGGTATGTGCAGCGGGACCTAGCGAAAATTGTTGACGAAGACCCACCAGCCATAATGCTTCTTTTTGAACCCAAAGGTCGTCCAGAAGATGAAGGAAATGATTTTTATATTCAAAGTAAAAAAAATATATGTGTAGGGTGTGGTGAAGGAAATCACTATTTACGGTACCGTATAATCCCATCATGCTATAGAATACACTTTCCCGAACATTTAAAAAGCCACCGGTCTCATGACATTGTTTTAGTTTGTGTCGATTGCCATGAAAAAGCACATTCATCTGCCGAAAGGTACAAAAAGAAAGTAGCTTTAGAATTCGGGATACCGTTATTTGTACATAAAGTGGTTAATTCTAACGAGCAACAAGATGTTTCCGGATCTTCGACATCTGTCATGAAACTTGGTGATTGTGGTGTGTCTCCTTTAGAGTTGAGAACGGCTGCAATGGCTCTTATTAGGCATGGCCCACGCATGCCACCTCAGCGCCGTGAGGAGTTGAAACAGGTTGTCAAGAAATACTATGGAGGAAGAGAAATATCAGAGGAAGATTTAGAAAAGGCTTTACTAGTAGGAATGAGTCCTCACGAAAAAAGACGATTACGGAAAAAAAGGGGCATATCTCTTAACAACACTTCTTCAAACAACATTGTTTCAGACAACGACATCAAGGGAGAAGATAATGTGGATTCATACAAAAATGAAGTTCACGAGCCCGAAAACGGTTCAAATCTGGATATTACGGATCCATCTGAAGTTGAACCAAACGGGCAGGTTCATTCGAGTTCTGATGGGGCGGTGTTTGCCACATGTAGTTCAAAGTTATCGTTATTAGGGCATGGCCCACATGGGAAACAAGTTGTTGATTATTTACTGAAGAACCATGGGGAAGTTGGGATTCAAGAATTTTGTCAAAGATGGAGGCAAGTTTTTGTTGAAAGTATTAATCCTCGGTTTTTGCCTGCGGGGTGGGATGTGACTCACAGCGGTAGAAGAGAGTTTGGGGACTTCAGTGTATACAATCCTGCAAATAAAGCTCCTGTTGCTACTAAGGATTAA 2718 40.51 MFFRIPISSYHQAAIVINLELILNSLGLQMENKHKLKIAFTVTFLAVASILLANKFRKHRKRKQNSTSCYLKSEAKPQHNFKRVLANNSYAPFKHLKLDENSSDLHPYESEIKALLEKLQLDIEFSNGSMDMKMSDKYVWVDDELKLKELVEVLSEERVFAVDTEQHSLRSFLGFTALIQISTRDEDYLVDTIAVHDIMGLLGPVFANPNICKVFHGADNDVIWLQRDFHIYVVNLFDTAKACDVLSKPQRSLAYLLETYCGVTTNKLYQREDWRQRPLPIDMVEYARMDAHYLLYIADCLVSELKNQKNENSATLDDDLHFVSEAIRRSNALCLQLFTKDLEASPGQSAAASMISRHLNDHGSSANNSQFQDLVRRLCCWRDLMARMHDESLKYVLSDNAIVSLAETVPLSPTDICTTLSQADIDTDFLNSNSTPRFPSSVVSSHLDDFPYLLQNETNNLDDLFQLILKKHIGPNGSCPFSLYNYGLLSKTNIKSSKRLVTKASGYKLSKQVARKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYVQRDLAKIVDEDPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLVCVDCHEKAHSSAERYKKKVALEFGIPLFVHKVVNSNEQQDVSGSSTSVMKLGDCGVSPLELRTAAMALIRHGPRMPPQRREELKQVVKKYYGGREISEEDLEKALLVGMSPHEKRRLRKKRGISLNNTSSNNIVSDNDIKGEDNVDSYKNEVHEPENGSNLDITDPSEVEPNGQVHSSSDGAVFATCSSKLSLLGHGPHGKQVVDYLLKNHGEVGIQEFCQRWRQVFVESINPRFLPAGWDVTHSGRREFGDFSVYNPANKAPVATKD 905
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean16g00799 905 MobiDBLite consensus disorder prediction 763 814 - -
Hean16g00799 905 ProSiteProfiles HRDC domain profile. 368 453 IPR002121 GO:0003676(InterPro)
Hean16g00799 905 Pfam 3'-5' exonuclease 138 305 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Hean16g00799 905 SUPERFAMILY Ribonuclease H-like 76 310 IPR012337 -
Hean16g00799 905 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 75 344 - -
Hean16g00799 905 SMART 35exoneu6 138 306 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Hean16g00799 905 PANTHER POLYMYOSITIS-SCLERODERMA AUTOANTIGEN-RELATED 60 898 IPR045092 GO:0000175(PANTHER)|GO:0000175(InterPro)|GO:0000176(PANTHER)|GO:0000467(PANTHER)|GO:0000467(InterPro)|GO:0003727(PANTHER)|GO:0005730(PANTHER)|GO:0071035(PANTHER)|GO:0071036(PANTHER)|GO:0071037(PANTHER)|GO:0071038(PANTHER)|GO:0071039(PANTHER)|GO:0071040(PANTHER)|GO:0071044(PANTHER)|GO:0071051(PANTHER)
Hean16g00799 905 SUPERFAMILY HRDC-like 368 420 IPR010997 GO:0000166(InterPro)|GO:0044237(InterPro)
Hean16g00799 905 CDD Rrp6p-like-exo 134 328 IPR049559 -
Hean16g00799 905 Gene3D HRDC domain 359 465 IPR044876 -
Hean16g00799 905 Gene3D - 52 344 IPR036397 GO:0003676(InterPro)
Hean16g00799 905 MobiDBLite consensus disorder prediction 797 814 - -
Hean16g00799 905 MobiDBLite consensus disorder prediction 776 795 - -
Hean16g00799 905 Pfam HRDC domain 372 415 IPR002121 GO:0003676(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean16g00799 K12951 cobalt/nickel-transporting P-type ATPase D [EC:7.2.2.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:22519083 Hean7g02100 Hean-Chr7:123771412 dispersed