AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean16g00826 ATGGGGTCCGCTTGTTGTGTTGCTGCTAGAGATAGAACTATAACGGATCGATCTAGTAATGATATTGTTACAAGAAATGATCGGTATTCGCCATCATGGAGCTTTAGGTGGGATAACCGGGGGCGTGTTGCAGGTGAAGAGTCGTCCGTTAACGACAGGTTGGACAATAAATCTCATACAACTGTAGAAACCGCTTATGCAACAGAAGGTAGTCCGTTGGACAGTTCTAGAAGTCTGAGGTGGCAAAAGTCACCACCTTCTGAAGAAATTGGGCTTCCCCAGTTAGATATGTTGCATTCCAAGAATCTTCATGAGATGAAAGATTCAAGGGGAACGCAAACTCCAGTAGCTTTGGAGCTATCTCCAACCAACATGCTAACCCCGACACATTCAATTTCATCCTTGTCAGCATCTCCTTTATCTTCTTCCCAAAGTCAACTCATGCCGATGTCGAGTTTGACTCCGTCAAGATGGGCCCGCCGTTCGCCAGGTCACCACCATCTACTCCGTCAAATATCCGATAGCCGAATTCGAGGCATGATGTCACCAAACTTTTCAATATCTGAAGATGGTTCAGGTTCTCCTTTCATGCACCATCCCGGGTTGACCAATAAGTCAAACGTCGGGTCCCACGGTGGGTCGTCAGACGGTTGGTCAAATAGAGATAGATGGTCTTTTGACAGTGATAGAGTTAGCCGTTCTAGTGTCAGGGTTTCATCCTCTCCGACGGTTGAGATCATGACATGTGCCATCTGCTCCAAGCTGTTGACCGAACGGTCATCTTGGAGCAGCCATAAACTCATGGCTACTAACGGGCTTCCGGTTGTTTCGGTTCTGATATGCGGGCACGTTTATCACGCAGAGTGTTTGGAAAATATGACGTCCGAGATCAATAAGTATGACCCAGCATGTCCAGTTTGTACTTTGGGAGAAAAAAAGGTTATTAAGTTGTCGGGTGAAATGGATTTCAAGGGTAAAATCGGAAAGAAGTTAAGTCGTCGGGTGGTGGATGGTGGTAATTCGGTTATTTTTAATCAGTTTGCAAATGGAAGGGGTCCCGTGATGGGGTCAAGTTCCAGCATGAAAAGCTCGACAAGTACGGGAAAACCGTTTTTAAGGAGACATTTTTCGTTTGGCTACAAACCGAATAGATCTTTTTCTGACAACGGTTTTAGAAAAAAGAGATTTTTCTGGTCGAAATCAAGCAAGGAGTGA 1215 45.35 MGSACCVAARDRTITDRSSNDIVTRNDRYSPSWSFRWDNRGRVAGEESSVNDRLDNKSHTTVETAYATEGSPLDSSRSLRWQKSPPSEEIGLPQLDMLHSKNLHEMKDSRGTQTPVALELSPTNMLTPTHSISSLSASPLSSSQSQLMPMSSLTPSRWARRSPGHHHLLRQISDSRIRGMMSPNFSISEDGSGSPFMHHPGLTNKSNVGSHGGSSDGWSNRDRWSFDSDRVSRSSVRVSSSPTVEIMTCAICSKLLTERSSWSSHKLMATNGLPVVSVLICGHVYHAECLENMTSEINKYDPACPVCTLGEKKVIKLSGEMDFKGKIGKKLSRRVVDGGNSVIFNQFANGRGPVMGSSSSMKSSTSTGKPFLRRHFSFGYKPNRSFSDNGFRKKRFFWSKSSKE 404
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean16g00826 404 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 229 309 IPR013083 -
Hean16g00826 404 PANTHER EXPRESSED PROTEIN 1 313 - -
Hean16g00826 404 SMART ring-2 249 307 IPR001841 -
Hean16g00826 404 MobiDBLite consensus disorder prediction 68 90 - -
Hean16g00826 404 MobiDBLite consensus disorder prediction 129 148 - -
Hean16g00826 404 MobiDBLite consensus disorder prediction 193 219 - -
Hean16g00826 404 ProSiteProfiles Zinc finger RING-type profile. 249 308 IPR001841 -
Hean16g00826 404 MobiDBLite consensus disorder prediction 68 83 - -
Hean16g00826 404 SUPERFAMILY RING-U-box 243 308 - -
Hean16g00826 404 MobiDBLite consensus disorder prediction 199 219 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean16g00826 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
100884 Hean10g02878 Hean16g00826
101579 Hean12g02272 Hean16g00826
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr12:70651908 Hean16g00826 Hean-Chr16:23759441 dispersed
Hean Hean-Chr16:23759441 Hean8g00317 Hean-Chr8:5076718 dispersed
Hean Hean-Chr10:152128331 Hean16g00826 Hean-Chr16:23759441 wgd