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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean16g00839 ATGGCCAAAAATTCAGTTGTTTTCTATGCATTTCTTCTGCTTCTCTTTGTTCTTGCTATCTCAGAAATCGGATCGGTGAAGGGAGAATTATGTGAGAAGGCAAGCAAGACATGGTCCGGAAAATGTGGCAACACAAGACACTGTGACGACCAGTGCAAGTCTTGGGAGGGTGCAGCCCATGGAGCTTGTCACGTGCGCGGTGGGAAACACATGTGCTTCTGCTACTTCAACTGTTCCAAAGCCCAGAAGTTGGCTCAGGATAAACTCATAGCAGAAGAGCTCGCCAAGGAGAAGATTGAAGCCGAAAAGGTGATAGCCAAACCTTGA 327 47.4 MAKNSVVFYAFLLLLFVLAISEIGSVKGELCEKASKTWSGKCGNTRHCDDQCKSWEGAAHGACHVRGGKHMCFCYFNCSKAQKLAQDKLIAEELAKEKIEAEKVIAKP 108
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean16g00839 108 PANTHER DEFENSIN-LIKE PROTEIN 1 1 78 - GO:0006952(PANTHER)
Hean16g00839 108 SMART gth-4 30 78 IPR003614 GO:0006952(InterPro)
Hean16g00839 108 Pfam Gamma-thionin family 30 78 - -
Hean16g00839 108 Gene3D - 30 78 IPR036574 -
Hean16g00839 108 SUPERFAMILY Scorpion toxin-like 29 78 IPR036574 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean16g00839 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:24274289 Hean16g00862 Hean-Chr16:26199027 dispersed
Hean Hean-Chr16:24274289 Hean16g00841 Hean-Chr16:24344276 proximal
Hean Hean-Chr12:4053714 Hean16g00839 Hean-Chr16:24274289 transposed
Hean Hean-Chr16:24274289 Hean3g01857 Hean-Chr3:108253624 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g00029 . 3 77 Plant Defensins gene family AT2G02100 52.0 1.32e-19 74.7
Hean17g02020 . 11 76 Plant Defensins gene family AT1G61070 36.364 1.12e-09 47.8
Hean16g00839 . 1 78 Plant Defensins gene family AT1G19610 51.282 2.30e-26 91.7
Hean16g00841 . 1 78 Plant Defensins gene family AT1G19610 52.564 2.96e-26 91.3
Hean16g00843 . 5 76 Plant Defensins gene family AT1G19610 39.726 1.75e-10 53.9
Hean16g00844 . 1 77 Plant Defensins gene family AT1G19610 38.462 3.50e-14 60.8
Hean16g00846 . 1 77 Plant Defensins gene family AT1G19610 38.462 2.33e-13 59.7
Hean16g00847 . 4 78 Plant Defensins gene family AT1G19610 46.753 2.64e-16 70.5
Hean16g00859 WGDA 3 78 Plant Defensins gene family AT1G19610 47.368 1.73e-20 79.3
Hean16g00860 WGDA 3 78 Plant Defensins gene family AT1G19610 47.368 7.59e-21 80.1
Hean16g00862 . 13 78 Plant Defensins gene family AT1G19610 54.545 1.38e-23 85.9
Hean16g00866 . 11 78 Plant Defensins gene family AT1G19610 41.176 2.12e-12 55.8
Hean16g00873 . 11 78 Plant Defensins gene family AT1G19610 36.765 3.91e-10 50.4
Hean15g00588 . 2 73 Plant Defensins gene family AT5G63660 57.534 1.16e-25 88.2
Hean12g00226 . 4 78 Plant Defensins gene family AT1G19610 50.667 9.84e-24 85.1
Hean12g01393 WGDA 1 77 Plant Defensins gene family AT2G02100 66.667 3.30e-34 110.0
Hean12g01394 . 1 77 Plant Defensins gene family AT2G02120 57.692 3.11e-27 92.4
Hean8g01886 WGDA 5 77 Plant Defensins gene family AT2G02120 62.162 8.31e-30 100.0
Hean6g02731 . 3 78 Plant Defensins gene family AT1G19610 46.753 1.43e-22 80.9
Hean5g01969 . 5 77 Plant Defensins gene family AT2G02100 36.986 9.05e-13 55.8
Hean5g01970 . 11 76 Plant Defensins gene family AT1G61070 36.364 1.12e-09 47.8
Hean4g04496 WGDA 7 78 Plant Defensins gene family AT1G19610 37.5 7.20e-13 61.2
Hean3g01411 . 20 73 Plant Defensins gene family AT5G63660 66.667 1.39e-21 77.4
Hean3g01412 . 20 73 Plant Defensins gene family AT5G63660 64.815 6.76e-21 75.5
Hean3g01857 . 7 78 Plant Defensins gene family AT1G19610 45.122 2.77e-25 88.2
Hean3g01858 . 7 78 Plant Defensins gene family AT1G19610 45.122 2.77e-25 88.2
Hean3g01859 . 7 78 Plant Defensins gene family AT1G19610 45.122 2.71e-25 88.6
Hean2g02611 . 18 73 Plant Defensins gene family AT5G63660 51.786 2.61e-15 61.6
Hean2g02612 . 25 77 Plant Defensins gene family AT2G02130 62.264 1.34e-18 70.1