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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean16g00900 ATGAGGTTTTTACAAGACGTTGGGTTTTCGGTTGTGGAGTCGAGAAGGGTATGTGGGCGGTTTCCTGCGATATTCGGGTATGGGATTGAGAATAATTTGAGGCCAAAGTATTTTTATTTGGTTAGGGATATGAAGAGGGATGGTAGGGAAGAAGTGAACAAGTTTCCGCAGTATTTTGGGTTTAGTTTGGAGAAGAGGATAAAGGTTAGACATTTGCATTTGAAAATGAGGAATGTTGATAGAGAGGTGCCATTGAATAGAATGTTGTTGTGGAGTGACCAAAGATTTTATAAGAAATGGAAATGA 306 39.22 MRFLQDVGFSVVESRRVCGRFPAIFGYGIENNLRPKYFYLVRDMKRDGREEVNKFPQYFGFSLEKRIKVRHLHLKMRNVDREVPLNRMLLWSDQRFYKKWK 101
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean16g00900 101 PANTHER CGI-12 PROTEIN-RELATED 2 99 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Hean16g00900 101 Pfam mTERF 1 96 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Hean16g00900 101 Gene3D Transcription termination factor 3, mitochondrial 1 101 IPR038538 -
Hean16g00900 101 SMART mt-12 15 47 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Hean16g00900 101 SMART mt-12 49 80 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean16g00900 K15031 mitochondrial transcription termination factor family protein
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean mTERF 1e-22 No_clan TR mTERF