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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean16g00913 ATGTTTACTAGTTTCGTACCTTTTCGAGGCATGAAATCAAAAATCGTTCCTTACTATATGAACGGAAATCCATCGAGCCTTTTTTGTATATTACCAAGAGACGATTCTTCGCGGTTTTACCCTCCTGGAACTGCACCTGTTTACCTTAACGTGTACGACATTTCCACCATCAACGGTTGTATATCTTGGACCGGCCTCGGTGCATTTCACACCGGTTTAGAAGTTCATGGTGTGGAGTACGGTTTCGGATGTCATCAAGAATCAGAAAGCGGTGTTTTTGAAATCGAGCCTCGAAAGTGCCCCGGGTTCAAGTTTAGGGAGTCGATTTTTATGGGCACGACGAAATTAACCCCGAGTCAAGTTCAAAGATTCATTGAGTTACAATCTAATAACTACTATGGTGACACATATCATCTATTCGGGAAGAATTGCAACCATTTTTGTGAAGATATGTGTTACCAGTTAACAGGGAACAAAATCCCCAAATGGGTCAATCGGCTAGCCCGAATAGGTTCGTGTTGTCGTTGCATTCTTCCAAAGGCTATCAAGGGTTCTTCTGCTGTTAGAGATGAATCAAACTCTCAAGAGAATGAAAAGAGGAGTTTAACAAGTTCGTTTAGTTGTTTCACATCGTTTTCGACGCATAATAAGTTGAGGAAAGTGTCAATATCCTCATTGTATAAACATTCACTCTACAAAGGATGTTTACCTCCATGGGAATTGCAAGTAGACTCACAAAGAGTTAGTGACAATGAGTAA 759 40.71 MFTSFVPFRGMKSKIVPYYMNGNPSSLFCILPRDDSSRFYPPGTAPVYLNVYDISTINGCISWTGLGAFHTGLEVHGVEYGFGCHQESESGVFEIEPRKCPGFKFRESIFMGTTKLTPSQVQRFIELQSNNYYGDTYHLFGKNCNHFCEDMCYQLTGNKIPKWVNRLARIGSCCRCILPKAIKGSSAVRDESNSQENEKRSLTSSFSCFTSFSTHNKLRKVSISSLYKHSLYKGCLPPWELQVDSQRVSDNE 252
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean16g00913 252 Gene3D PPPDE domains 41 200 IPR042266 -
Hean16g00913 252 ProSiteProfiles PPPDE domain profile. 45 182 IPR008580 GO:0008233(InterPro)
Hean16g00913 252 PANTHER DESUMOYLATING ISOPEPTIDASE 44 204 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Hean16g00913 252 Pfam PPPDE putative peptidase domain 46 180 IPR008580 GO:0008233(InterPro)
Hean16g00913 252 SMART DUF862-2a 45 183 IPR008580 GO:0008233(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean16g00913 K22763 deubiquitinase DESI2 [EC:3.4.19.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
404077 Hean16g00913 Hean4g04495
404078 Hean16g00913 Hean4g04517
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:28554121 Hean9g03808 Hean-Chr9:169965657 dispersed
Hean Hean-Chr16:28554121 Hean4g04517 Hean-Chr4:206785483 wgd