AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean16g01330 ATGGAGATCGCACCACCCGACGGCGTCGGAAACCTACCTGAATCCTCATCTACTTCCACCGATAACAATAACTTATCGAGCAACAGGTACGACGATGAAGAAGAAGAAGAAGAGGACGTTTGCCGGATCTGCCGGAATCCAGGAGACGCCGATAATCCACTCCGGTATCCGTGTGCTTGTAGCGGCAGTATTAAGTATGTTCACCAAGACTGTCTTCTTCAGTGGCTTAATCACAGCAACGCTCGTCACTGCGAGATTTCCATCATCATAATTAGGAGACAGTTTTGTGACCTGGAGCAGATAAAAAGTTACAGTAGGAGAGTGGCAAGCTTGTGTAACAATTGTATTGTATGCAAGCACCCCTTTTCATTCTCCCCTGTATATGCCGAAAATGCCCCTAGAAGGCTACCTTTTCAGGAATTTATTATTGGAATAGCAATGAAAGCCTATACCGTGATCCGGTTCTTCATACGTTTGATATTCGTGCTGTCGGTATGGCTTTTAATCATACGATTTATCACATTCTGGATATGGCGACTCTCATTCATCAGGAGTTTTAACGAAGCCAAGAGACTTTTCTTAAGTCATATTTCAACTACACTCATTCTCACCGACTGTCTTCACGGGTTCGTCTTCTCTGCAAGCATCGTGTTTATTTTTCTCGGTGCCACATCTTTGAGGGACTATTTTCGACATTTAAGAGAACTTGGAGGGCAGGAAGGTGACAGAGAGGATGAATTAGATGAAAACGGTGCTCTATTTGCAAGGAATGGTGAAGATGTTGTCGGGGCCCACGGTATTGGTGGGGCCGGTCAGTTGATTAGAAGGAATGCGGAAAACGTTGCTGCCAGGTGGGAGATGCAAGCGGCTCGGCTCGAGGCACATGTGGAACAGATGTTTGACGGTTTGGATGACGGTGATGGTGCAGAGGATGTTCCATTTGATGAACTGGTTGGTATGCAGGGGCCAGTGTTCCATTTGGTGGAAAATGCATTTACTTCAATCGGTCAAAGAGTTGACTTCTTTTCGGTTTCTCCACTAGCAAGCTCGTTGATTCATTGGGTTGTCGGGATTGCCTACATGTTGCAAATATCCATATTTGTTAGTCTTCTTCGTGGGGTTTTGCGGAATGGAGTTCTTTATTTTTTGCGGGATCCAGCTGATCCAAATTACAATCCGTTTAGGGATTTGATTGATGATCCTGTGTATAAGCATGCTCGCAGGGTGCTCTTGTCAGTTGCTGTTTATGGGAGTTTAATTGTAATGCTGGTATTTTTGCCAGTTAAACTTGCTATGCGAATGGCTCCCTCGATATTCCCTCTTGATATATCAGTATCTGACCCGTTCACGGAGATTCCTGCTGACATGCTTCTCTTTCAAATTTGCATTCCGTTTGCCCTTGAGCATTTTAAGCTGCGTGCTACAATCAAAGCACTTCTGCACTATTGGTTTACTGCAGTCGGGTGGGCCCTCGGTTTAACAGATTACTTATTGCCCAGACCCGAAGACATCGCTGGACAAGAAAACGAGAATGATCCAGCAAGGCTGGACAGGATACATTCTCAATTAGGTGGTCAACTCGGGGGTCAACATCGAGCTGTAGCTGGGTATTTACCCCCTGGCGAATTGAACCAAGCTAGTCTTGCAGAAGAAGATAATGACGATGAGCAATCTGATTCAGAGAGGTACATGTTTGTTCTGTGTATTGTGCTGCTTTTGTTGGTGGCTTGGATGACATTGCTGATCTTCAATTCTGCTATAATTGTGTTGCCTGTATCTCTTGGACGCGTGTTGTTCAATGCAGTTCCCCTTCTCCCTACCGCACATGGTATCAAATGCAATGGTAATGGGTCCAAACTAACCCACCACCATATTTATAGTATGGGTTGGGCAGGTTGGGTAACGTCCCAAAATTCTGTTAATCTAAGCAGATAA 1935 45.01 MEIAPPDGVGNLPESSSTSTDNNNLSSNRYDDEEEEEEDVCRICRNPGDADNPLRYPCACSGSIKYVHQDCLLQWLNHSNARHCEISIIIIRRQFCDLEQIKSYSRRVASLCNNCIVCKHPFSFSPVYAENAPRRLPFQEFIIGIAMKAYTVIRFFIRLIFVLSVWLLIIRFITFWIWRLSFIRSFNEAKRLFLSHISTTLILTDCLHGFVFSASIVFIFLGATSLRDYFRHLRELGGQEGDREDELDENGALFARNGEDVVGAHGIGGAGQLIRRNAENVAARWEMQAARLEAHVEQMFDGLDDGDGAEDVPFDELVGMQGPVFHLVENAFTSIGQRVDFFSVSPLASSLIHWVVGIAYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVYKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFALEHFKLRATIKALLHYWFTAVGWALGLTDYLLPRPEDIAGQENENDPARLDRIHSQLGGQLGGQHRAVAGYLPPGELNQASLAEEDNDDEQSDSERYMFVLCIVLLLLVAWMTLLIFNSAIIVLPVSLGRVLFNAVPLLPTAHGIKCNGNGSKLTHHHIYSMGWAGWVTSQNSVNLSR 644
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean16g01330 644 CDD RING-CH-C4HC3-MARCH6 40 86 - -
Hean16g01330 644 MobiDBLite consensus disorder prediction 11 26 - -
Hean16g01330 644 Coils Coil 275 295 - -
Hean16g01330 644 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 22 125 IPR013083 -
Hean16g01330 644 SMART ringv-2 40 87 IPR011016 GO:0008270(InterPro)
Hean16g01330 644 Pfam RING-variant domain 41 86 IPR011016 GO:0008270(InterPro)
Hean16g01330 644 MobiDBLite consensus disorder prediction 1 34 - -
Hean16g01330 644 SUPERFAMILY RING-U-box 35 87 - -
Hean16g01330 644 PANTHER SSM4 PROTEIN 334 628 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Hean16g01330 644 ProSiteProfiles Zinc finger RING-CH-type profile. 33 94 IPR011016 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean16g01330 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
102765 Hean16g01330 Hean3g01608
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:51129742 Hean9g01324 Hean-Chr9:76252712 dispersed
Hean Hean-Chr16:51129742 Hean16g02488 Hean-Chr16:127395505 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g01568 WGDA 68 141 HMGR gene family AT4G34100 33.784 8.86e-10 57.4
Hean17g02944 . 94 615 HMGR gene family AT1G76490 67.816 0.0 735.0
Hean17g02946 . 51 632 HMGR gene family AT1G76490 67.979 0.0 816.0
Hean17g04516 . 68 142 HMGR gene family AT4G34100 36.0 4.09e-10 58.9
Hean16g01325 . 897 964 HMGR gene family AT4G34100 72.059 1.96e-23 94.7
Hean16g01330 ACH 37 351 HMGR gene family AT4G34100 65.07 2.61e-141 437.0
Hean16g02123 . 51 632 HMGR gene family AT1G76490 73.196 0.0 873.0
Hean16g02488 . 67 1067 HMGR gene family AT4G34100 71.272 0.0 1458.0
Hean16g04664 WGDA 51 632 HMGR gene family AT1G76490 70.413 0.0 848.0
Hean15g01539 ACH 68 129 HMGR gene family AT4G34100 37.097 2.74e-09 55.8
Hean15g02650 ACH,WGDA 51 632 HMGR gene family AT1G76490 67.987 0.0 830.0
Hean14g01785 ACH 57 118 HMGR gene family AT4G34100 37.097 3.43e-11 60.1
Hean12g03458 . 68 142 HMGR gene family AT4G34100 34.667 1.97e-10 59.3
Hean9g01324 WGDA 67 1107 HMGR gene family AT4G34100 74.476 0.0 1541.0
Hean9g01694 . 68 125 HMGR gene family AT4G34100 41.379 1.90e-09 56.6
Hean9g02810 ACH 68 129 HMGR gene family AT4G34100 40.323 4.14e-10 58.2
Hean8g00505 ACH 68 129 HMGR gene family AT4G34100 38.71 8.33e-10 57.0
Hean8g00901 . 51 632 HMGR gene family AT1G76490 71.333 0.0 861.0
Hean8g03313 ACH,WGDA 68 129 HMGR gene family AT4G34100 40.323 8.26e-11 60.1
Hean7g01172 ACH 434 582 HMGR gene family AT1G76490 67.114 1.85e-66 213.0
Hean6g00487 WGDA 68 131 HMGR gene family AT4G34100 36.923 3.72e-11 60.1
Hean6g01144 WGDA 67 123 HMGR gene family AT4G34100 40.351 4.90e-11 62.8
Hean5g00588 . 112 313 HMGR gene family AT4G34100 41.089 6.24e-37 134.0
Hean5g03160 ACH,WGDA 68 129 HMGR gene family AT4G34100 40.323 1.75e-09 57.0
Hean4g03206 WGDA 68 131 HMGR gene family AT4G34100 35.385 1.19e-09 55.8
Hean3g01608 ACH,WGDA 67 1107 HMGR gene family AT4G34100 74.117 0.0 1567.0
Hean2g01389 ACH 68 131 HMGR gene family AT4G34100 40.625 5.25e-09 55.5
Hean1g00073 . 68 127 HMGR gene family AT4G34100 34.426 1.30e-09 55.5
Hean1g00074 . 68 124 HMGR gene family AT4G34100 34.483 1.12e-10 54.3