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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean16g01349 ATGCACTGTGAGCCGTTTGACTTTGACCCAACAGTGGTGACGGGGCAGTCATGGAACACATCAGTTCTCGAAAGCAAAACCCCAGTACTAGTTGAGTTCTATGCCAGCTGGTGTGGACCATGCCAAATGGTGCACCGTGTGATCGATGAGATTGCAGCCGAATATGCAGGGAAGGTGAACTGTTACGTGCTAAACGCTGACAAGGACCCACGAATCACAGAGGAATACGACATCAAAGCGGTCCCAATAGTGGTTTTGTTCAAGAACGGTGAGAAGTGTGAGTCAGTGGTTGGGACCATGCCTAAAGAGTTCTATGTGGCTGCCATTGAAAGGGTCTTGTCGTCTTCGTCTTGA 354 49.44 MHCEPFDFDPTVVTGQSWNTSVLESKTPVLVEFYASWCGPCQMVHRVIDEIAAEYAGKVNCYVLNADKDPRITEEYDIKAVPIVVLFKNGEKCESVVGTMPKEFYVAAIERVLSSSS 117
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean16g01349 117 PIRSF Thioredoxin 9 113 IPR005746 GO:0015035(InterPro)
Hean16g01349 117 CDD TRX-family 21 110 - -
Hean16g01349 117 SUPERFAMILY Thioredoxin-like 5 114 IPR036249 -
Hean16g01349 117 PANTHER GEO12009P1 9 113 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Hean16g01349 117 Gene3D Glutaredoxin 11 116 - -
Hean16g01349 117 ProSiteProfiles Thioredoxin domain profile. 1 114 IPR013766 -
Hean16g01349 117 FunFam Thioredoxin 7 116 - -
Hean16g01349 117 Pfam Thioredoxin 12 109 IPR013766 -
Hean16g01349 117 PRINTS Thioredoxin family signature 37 46 - -
Hean16g01349 117 PRINTS Thioredoxin family signature 29 37 - -
Hean16g01349 117 PRINTS Thioredoxin family signature 77 88 - -
Hean16g01349 117 ProSitePatterns Thioredoxin family active site. 30 48 IPR017937 -
Hean16g01349 117 NCBIfam thioredoxin 14 111 IPR005746 GO:0015035(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean16g01349 K03671 thioredoxin
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:52324535 Hean3g02417 Hean-Chr3:129704330 dispersed
Hean Hean-Chr11:140548550 Hean16g01349 Hean-Chr16:52324535 transposed
Hean Hean-Chr16:52324535 Hean16g02497 Hean-Chr16:128066755 wgd