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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean16g01365 ATGGAGATTCAGCAACAGGTTTTGCAAATCAAAGCCCCGAAGCCTAAGCGAAGGGTGAAAATAGATGAGAATTGTGATCCTCTATCCAAATCCGCTGCTTTTCTTCGAGCGTCAAAGGTTCAAGCAAGCCTTCCACCCGAGTTACCGAGTTTCGTGAAGCCTATGAGCCCTTCACATGTTTCTGCTAGCTTTTGTCTGGGACTTCCCAAGAAATTCTGTGACGCACATATGCCGAAACAGGATGAAACAATTGTTTTGGTGGATGAAGACGGCAAAGAATTCAACACAAAGTTTCTCGTCGAGAAAACTGGATTGAGTAGTGGGTGGAGAGCGTTTTCGATTGGTCACAAATTGCGTGAGGGAGATGCTCTAGTTTTTCAGCTGATTGACAGTTGGAAATTTAAAGTCTACATAGTCAGGGTACACAGTCTAAATGCAACTGTAACGGTTTCAAGAAATCAAATCGAATTTGGCTTGAGGAACTCTGAGATAGCTGAAGATATGGATATAGATTCGCATCAACAAAATGTTCAAGATAAAGCGTTGGTAGTGTTGGATCAATCTGGAGACGGGTATGCAGATTCAGACGTTTTAGACGGACTCAGATTCTCACAATCCGTACTTGACTTCAACGATATCCAGAATATCGATGATTTCAGTATCGTTGTGGATGATTTAGTCGTAGATTCTGAAATACCAAAGCATTTTCGAATCAAATACTATGAGTTATGTCATAGTCAAAAGTCATACCTTCATGAAAACCTCTTAAAAGGTTTTAATGTTAAACTAGCGGTTGGGATCATTCTTGAAACCGTTACAATTGCTGATGCAATAAAAGCTTGTAAAGTCGATATTGCTCGTGATGATCTTGCCACGTGGGATAAAACCCTCAAGGCATTTGAAGATCTGGGTATGAAAGTCGGGTTTTTAAGGGCCCGGTTATGTAAGCTTGTCGGGCTTTTGTTTGAATTGAACGAGCTTTTGGAAGCAAAAAAGAATGAACAAGTGAAAGCAGAGGAGGAGATGAGAAGGGTTAGAGAAGTGATCAAGAATCTTGATGTTGAGATTGAATCTTTGGAGCTAAAAGGCAAGAATCTTGAATTAGCCTTTTGTACAGAGGCTAATGCACCTTGGTGA 1137 40.72 MEIQQQVLQIKAPKPKRRVKIDENCDPLSKSAAFLRASKVQASLPPELPSFVKPMSPSHVSASFCLGLPKKFCDAHMPKQDETIVLVDEDGKEFNTKFLVEKTGLSSGWRAFSIGHKLREGDALVFQLIDSWKFKVYIVRVHSLNATVTVSRNQIEFGLRNSEIAEDMDIDSHQQNVQDKALVVLDQSGDGYADSDVLDGLRFSQSVLDFNDIQNIDDFSIVVDDLVVDSEIPKHFRIKYYELCHSQKSYLHENLLKGFNVKLAVGIILETVTIADAIKACKVDIARDDLATWDKTLKAFEDLGMKVGFLRARLCKLVGLLFELNELLEAKKNEQVKAEEEMRRVREVIKNLDVEIESLELKGKNLELAFCTEANAPW 378
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean16g01365 378 ProSiteProfiles B3 DNA-binding domain profile. 51 142 IPR003340 GO:0003677(InterPro)
Hean16g01365 378 Coils Coil 321 369 - -
Hean16g01365 378 SMART B3-2 51 142 IPR003340 GO:0003677(InterPro)
Hean16g01365 378 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 17 143 IPR044837 -
Hean16g01365 378 CDD B3-DNA 49 140 IPR003340 GO:0003677(InterPro)
Hean16g01365 378 SUPERFAMILY DNA-binding pseudobarrel domain 44 141 IPR015300 -
Hean16g01365 378 Pfam B3 DNA binding domain 51 140 IPR003340 GO:0003677(InterPro)
Hean16g01365 378 Gene3D - 30 143 IPR015300 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean16g01365 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
404153 Hean16g01365 Hean4g04548
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:53053581 Hean4g04548 Hean-Chr4:207096512 dispersed
Hean Hean-Chr16:53053581 Hean4g04550 Hean-Chr4:207113774 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g00181 . 15 581 B3 DNA Binding Superfamily AT2G46530 57.711 0.0 642.0
Hean17g01533 . 6 370 B3 DNA Binding Superfamily AT4G00260 22.055 1.29e-10 62.0
Hean17g04477 . 9 320 B3 DNA Binding Superfamily AT5G66980 23.75 1.73e-14 71.6
Hean16g00016 . 21 124 B3 DNA Binding Superfamily AT3G18960 25.0 4.42e-08 52.0
Hean16g01364 ACH,WGDA 59 199 B3 DNA Binding Superfamily AT5G42700 40.426 4.92e-27 104.0
Hean16g01365 WGDA 112 221 B3 DNA Binding Superfamily AT3G19184 56.364 2.03e-36 132.0
Hean16g01370 . 270 399 B3 DNA Binding Superfamily AT4G30080 61.538 2.27e-44 154.0
Hean16g02568 . 494 666 B3 DNA Binding Superfamily AT4G30080 48.876 1.44e-41 145.0
Hean16g02885 . 1 485 B3 DNA Binding Superfamily AT2G33860 52.61 6.98e-161 471.0
Hean16g04229 . 171 289 B3 DNA Binding Superfamily AT1G05930 34.4 1.39e-14 66.6
Hean16g04230 . 171 289 B3 DNA Binding Superfamily AT1G05930 32.8 1.15e-13 64.3
Hean16g04233 . 136 241 B3 DNA Binding Superfamily AT4G03170 34.783 1.33e-07 49.3
Hean16g04251 . 165 289 B3 DNA Binding Superfamily AT1G05930 31.061 1.81e-07 49.3
Hean16g04308 . 270 302 B3 DNA Binding Superfamily AT4G30080 57.576 1.03e-06 42.0
Hean16g04671 . 1 801 B3 DNA Binding Superfamily AT5G37020 63.625 0.0 957.0
Hean15g00172 . 142 289 B3 DNA Binding Superfamily AT1G05930 28.025 3.41e-08 50.8
Hean15g00535 WGDA 431 713 B3 DNA Binding Superfamily AT3G24650 56.849 9.13e-91 298.0
Hean15g01096 . 6 508 B3 DNA Binding Superfamily AT4G00260 22.901 1.05e-15 77.8
Hean15g01360 ACH 15 313 B3 DNA Binding Superfamily AT3G26790 41.042 1.07e-56 184.0
Hean15g01570 . 121 193 B3 DNA Binding Superfamily AT5G62000 71.233 8.47e-30 108.0
Hean15g02121 . 1 797 B3 DNA Binding Superfamily AT5G37020 57.957 0.0 841.0
Hean15g02312 . 3 488 B3 DNA Binding Superfamily AT2G33860 53.441 1.18e-168 494.0
Hean15g02419 . 5 516 B3 DNA Binding Superfamily AT4G32010 39.051 1.40e-103 332.0
Hean15g02661 . 1 808 B3 DNA Binding Superfamily AT5G37020 63.183 0.0 951.0
Hean15g03678 ACH,WGDA 95 211 B3 DNA Binding Superfamily AT5G42700 47.863 4.83e-33 121.0
Hean15g03679 ACH,WGDA 92 211 B3 DNA Binding Superfamily AT5G42700 48.333 1.56e-33 124.0
Hean15g04387 . 8 571 B3 DNA Binding Superfamily AT4G30080 51.557 1.57e-177 513.0
Hean14g00417 . 4 891 B3 DNA Binding Superfamily AT1G19850 58.7 0.0 968.0
Hean14g02155 . 1 794 B3 DNA Binding Superfamily AT5G37020 65.091 0.0 983.0
Hean14g03010 ACH 74 223 B3 DNA Binding Superfamily AT3G26790 45.333 2.54e-39 138.0
Hean14g03125 . 2 693 B3 DNA Binding Superfamily AT2G28350 52.661 0.0 673.0
Hean14g03153 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.432 0.0 724.0
Hean14g03632 . 1 666 B3 DNA Binding Superfamily AT4G30080 56.223 0.0 690.0
Hean13g01247 . 2 693 B3 DNA Binding Superfamily AT2G28350 53.736 0.0 635.0
Hean13g01612 . 12 670 B3 DNA Binding Superfamily AT4G30080 56.287 0.0 685.0
Hean13g01771 . 66 125 B3 DNA Binding Superfamily AT2G33860 48.438 2.23e-16 70.1
Hean13g02069 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.523 0.0 700.0
Hean13g03247 . 7 616 B3 DNA Binding Superfamily AT4G23980 58.452 0.0 689.0
Hean12g00514 . 15 447 B3 DNA Binding Superfamily AT1G19220 73.059 0.0 640.0
Hean12g01405 . 52 161 B3 DNA Binding Superfamily AT1G01030 71.429 4.90e-47 169.0
Hean12g02694 . 85 120 B3 DNA Binding Superfamily AT5G37020 80.556 4.72e-13 65.1
Hean12g03139 . 155 183 B3 DNA Binding Superfamily AT2G46530 89.655 6.43e-14 64.7
Hean12g03210 ACH 112 222 B3 DNA Binding Superfamily AT3G19184 44.144 6.26e-25 102.0
Hean12g03211 . 1 234 B3 DNA Binding Superfamily AT3G19184 31.78 1.20e-24 96.7
Hean12g03214 . 97 222 B3 DNA Binding Superfamily AT3G19184 32.54 2.58e-11 58.2
Hean12g03215 ACH 1 234 B3 DNA Binding Superfamily AT3G19184 36.975 8.02e-33 121.0
Hean11g01944 . 217 354 B3 DNA Binding Superfamily AT1G59750 30.435 2.31e-15 70.5
Hean11g01945 . 217 354 B3 DNA Binding Superfamily AT1G59750 45.652 3.54e-37 133.0
Hean11g01957 . 16 93 B3 DNA Binding Superfamily AT1G59750 56.41 7.03e-26 98.6
Hean11g01959 . 16 107 B3 DNA Binding Superfamily AT1G59750 52.174 7.84e-28 104.0
Hean11g01966 . 217 354 B3 DNA Binding Superfamily AT1G59750 45.652 3.64e-35 130.0
Hean11g02269 . 282 337 B3 DNA Binding Superfamily AT4G23980 67.857 1.97e-24 92.4
Hean11g02536 . 1 767 B3 DNA Binding Superfamily AT4G32010 50.826 0.0 708.0
Hean10g00254 WGDA 439 683 B3 DNA Binding Superfamily AT3G24650 61.044 8.49e-88 286.0
Hean10g00858 . 8 773 B3 DNA Binding Superfamily AT4G32010 51.25 0.0 701.0
Hean10g01921 . 319 401 B3 DNA Binding Superfamily AT2G28350 78.571 1.77e-41 141.0
Hean10g02454 ACH 6 221 B3 DNA Binding Superfamily AT3G19184 61.187 3.66e-81 242.0
Hean10g02455 ACH 75 199 B3 DNA Binding Superfamily AT5G42700 43.2 1.06e-30 112.0
Hean10g03067 . 32 83 B3 DNA Binding Superfamily AT1G19850 78.182 1.01e-19 85.1
Hean10g03137 . 4 490 B3 DNA Binding Superfamily AT1G19220 67.063 0.0 632.0
Hean10g03600 . 4 111 B3 DNA Binding Superfamily AT2G33860 39.286 3.53e-18 76.6
Hean9g00960 . 1 451 B3 DNA Binding Superfamily AT1G19220 72.451 0.0 654.0
Hean9g01500 . 1 593 B3 DNA Binding Superfamily AT4G30080 53.279 0.0 558.0
Hean9g01656 . 282 366 B3 DNA Binding Superfamily AT4G32010 57.647 2.72e-31 112.0
Hean9g02264 . 97 156 B3 DNA Binding Superfamily AT1G30330 83.333 1.13e-30 110.0
Hean9g02491 . 173 236 B3 DNA Binding Superfamily AT5G58280 39.13 1.78e-10 55.5
Hean9g03106 WGDA 112 243 B3 DNA Binding Superfamily AT3G19184 48.485 3.37e-38 139.0
Hean9g03107 ACH,WGDA 112 267 B3 DNA Binding Superfamily AT3G19184 40.385 1.03e-32 124.0
Hean9g03109 ACH 112 229 B3 DNA Binding Superfamily AT3G19184 49.153 1.01e-33 125.0
Hean9g04216 . 103 202 B3 DNA Binding Superfamily AT2G46530 75.0 3.69e-50 165.0
Hean9g04217 . 236 334 B3 DNA Binding Superfamily AT3G61830 45.455 2.22e-18 75.5
Hean8g00923 . 167 289 B3 DNA Binding Superfamily AT1G05930 32.558 8.43e-13 65.5
Hean8g01124 . 1 665 B3 DNA Binding Superfamily AT4G30080 53.12 0.0 652.0
Hean8g01471 . 55 394 B3 DNA Binding Superfamily AT5G62000 45.029 3.97e-93 299.0
Hean8g01473 . 52 399 B3 DNA Binding Superfamily AT5G62000 45.763 1.04e-98 311.0
Hean8g02524 . 1 672 B3 DNA Binding Superfamily AT4G32010 49.171 0.0 656.0
Hean8g03093 . 1 844 B3 DNA Binding Superfamily AT5G62000 58.102 0.0 927.0
Hean8g03466 . 115 227 B3 DNA Binding Superfamily AT3G19184 42.478 1.52e-23 93.6
Hean7g00423 . 13 581 B3 DNA Binding Superfamily AT2G46530 59.536 0.0 676.0
Hean7g00783 . 4 218 B3 DNA Binding Superfamily AT5G58280 53.125 1.70e-70 218.0
Hean7g01210 . 1 796 B3 DNA Binding Superfamily AT5G37020 65.884 0.0 959.0
Hean7g02243 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.365 0.0 730.0
Hean7g02454 . 52 83 B3 DNA Binding Superfamily AT2G33860 62.5 1.15e-08 47.4
Hean6g00337 . 1 616 B3 DNA Binding Superfamily AT4G23980 58.544 0.0 676.0
Hean6g01244 . 167 259 B3 DNA Binding Superfamily AT1G05930 27.835 1.15e-06 44.3
Hean6g02756 . 3 656 B3 DNA Binding Superfamily AT1G59750 67.584 0.0 868.0
Hean6g03191 . 32 895 B3 DNA Binding Superfamily AT1G19850 59.481 0.0 952.0
Hean5g01243 . 317 387 B3 DNA Binding Superfamily AT5G37020 81.69 4.73e-35 127.0
Hean5g01761 . 67 448 B3 DNA Binding Superfamily AT1G19850 70.419 0.0 555.0
Hean5g02728 . 275 387 B3 DNA Binding Superfamily AT4G32010 54.386 1.27e-34 129.0
Hean5g02831 . 107 195 B3 DNA Binding Superfamily AT3G61830 46.875 9.24e-19 77.0
Hean5g02888 . 1 848 B3 DNA Binding Superfamily AT5G62000 57.791 0.0 945.0
Hean4g00698 . 1 855 B3 DNA Binding Superfamily AT5G62000 58.851 0.0 947.0
Hean4g01131 . 150 237 B3 DNA Binding Superfamily AT4G30080 75.281 5.50e-42 145.0
Hean4g02922 . 1 797 B3 DNA Binding Superfamily AT5G37020 57.21 0.0 832.0
Hean4g03100 . 1 508 B3 DNA Binding Superfamily AT2G33860 51.544 3.78e-175 507.0
Hean4g04548 WGDA 134 230 B3 DNA Binding Superfamily AT3G19184 58.763 2.74e-36 130.0
Hean4g04550 ACH,WGDA 112 247 B3 DNA Binding Superfamily AT3G19184 52.482 9.62e-41 143.0
Hean3g00012 . 1 1086 B3 DNA Binding Superfamily AT1G19220 54.342 0.0 984.0
Hean3g00212 . 57 104 B3 DNA Binding Superfamily AT4G34400 35.417 8.51e-06 41.6
Hean3g00570 . 271 337 B3 DNA Binding Superfamily AT5G20730 67.647 3.95e-27 102.0
Hean3g00982 . 12 472 B3 DNA Binding Superfamily AT1G19220 69.742 0.0 624.0
Hean3g01735 . 270 399 B3 DNA Binding Superfamily AT4G30080 63.077 3.96e-46 158.0
Hean3g01901 . 6 225 B3 DNA Binding Superfamily AT4G00260 27.313 1.59e-15 74.7
Hean3g02585 . 165 289 B3 DNA Binding Superfamily AT1G05930 30.303 1.36e-08 52.4
Hean2g00311 . 47 837 B3 DNA Binding Superfamily AT5G62000 61.202 0.0 924.0
Hean2g00852 . 1 228 B3 DNA Binding Superfamily AT3G19184 52.301 3.72e-69 212.0
Hean2g01555 . 58 392 B3 DNA Binding Superfamily AT5G62000 44.083 2.60e-85 276.0
Hean2g01920 WGDA 136 244 B3 DNA Binding Superfamily AT4G03170 31.25 8.71e-06 43.9
Hean2g02584 . 1 662 B3 DNA Binding Superfamily AT4G30080 53.179 0.0 660.0
Hean1g00117 . 90 155 B3 DNA Binding Superfamily AT5G37020 75.758 7.11e-30 108.0
Hean1g00820 . 85 103 B3 DNA Binding Superfamily AT5G37020 100.0 7.60e-07 42.4
Hean1g01472 . 360 384 B3 DNA Binding Superfamily AT4G30080 76.0 2.37e-07 45.8
Hean1g01570 . 9 701 B3 DNA Binding Superfamily AT2G30470 48.668 0.0 609.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean B3 1.3e-16 CL0405 TF B3