AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean17g04524 ATGGCGTCTCCTCTTCACCCCGCAGTCACCGTATCTAATATCCGACAACTCATCCCGATCACCTTAGACATTGAAACCGCTCACTACACTTCGTGGTCGGAACTCTTCAAGATTCAATGTAAGGCGTTTCAAGTGTACGACCATCTTCAGCCCCAAACCACTCCTGCTACTTCTTCTGATAAAGATAAGGAAAAAGAAAAGCCTACTGAATCATGGGAACGTCTGGATTCGATAGTTCTGCAGTGGATATACGGGACTATATCCCAAGATCTTCTACACACTATTTTGAAGCCGAACACCACTGCCTTTGATGCATGGACTGCTCTCGCCAACCTGTTTCAAGACAATAAAGCAACCCAAACCATTGATCTCAACAAGAAGTTCGCTAGTACAAGGCTAGATCAGTTCCCTAACATGTCGGCTTATTGTCAGGTGATGAAGGTTATTTTCGACCAACTCCAGAATGTGGGCTCTCCAATCACAGACGAGCAGCTTGTCCTACAACTTCTAACGGGTCTCACCGAGCAATATGAAGGTATCACTATGATCATTCAACAAACTAAACCTTTACCAGATTTCTATGATGCTAGGTCCCATCTATGCATGGCCGAAACAAGGAAAATCAATCAGGCTAAAGTTGCCGCTCAAGTTGCCGGTACAACCCTAACCGCAACAACTGACCAACACTCATTAAGATCGTCTCGTCAAGAACAACAAACCGAAACTTCTGAACGTGGCAGGGGGCGCGGCCGGGGACGTGGCAGGGGACGCGGCCGCGGGTCATCTACTTGGGGTCGCGGTACCAACAACCTCGCGCCTACACAAAACTATTATCCCTGGCCCAATCAGTTTCAAACATGGCCCGCTCCACCTGGTTACAGCCCACCTACCTGGAACTCGTGGACTCGCATTCCACCGTGCCCCTATCCTACAGCCCTTCGGCCCAACAGTGGTGGCTCAGGTGTACTAGGTCCAAGGCCTGCTCAATCATATGCTGCAAGTTACACTCCAACCAACATTGATCAGGCACTCTATGCAATGTCTCTCAACCCTCAAGATCAAACTTGGACCATGGATACTGGCGAAACAGGATCTCAAGACCCGGACCCTTATCCTACGATGCAATAG 1128 48.85 MASPLHPAVTVSNIRQLIPITLDIETAHYTSWSELFKIQCKAFQVYDHLQPQTTPATSSDKDKEKEKPTESWERLDSIVLQWIYGTISQDLLHTILKPNTTAFDAWTALANLFQDNKATQTIDLNKKFASTRLDQFPNMSAYCQVMKVIFDQLQNVGSPITDEQLVLQLLTGLTEQYEGITMIIQQTKPLPDFYDARSHLCMAETRKINQAKVAAQVAGTTLTATTDQHSLRSSRQEQQTETSERGRGRGRGRGRGRGRGSSTWGRGTNNLAPTQNYYPWPNQFQTWPAPPGYSPPTWNSWTRIPPCPYPTALRPNSGGSGVLGPRPAQSYAASYTPTNIDQALYAMSLNPQDQTWTMDTGETGSQDPDPYPTMQ 375
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean17g04524 375 PANTHER - 20 281 - -
Hean17g04524 375 MobiDBLite consensus disorder prediction 351 375 - -
Hean17g04524 375 Pfam gag-polypeptide of LTR copia-type 72 207 - -
Hean17g04524 375 MobiDBLite consensus disorder prediction 224 276 - -
Hean17g04524 375 MobiDBLite consensus disorder prediction 262 276 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean17g04524 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr13:61574684 Hean17g04524 Hean-Chr17:194131328 dispersed
Hean Hean-Chr13:121779257 Hean17g04524 Hean-Chr17:194131328 dispersed
Hean Hean-Chr15:65910972 Hean17g04524 Hean-Chr17:194131328 dispersed
Hean Hean-Chr15:128651649 Hean17g04524 Hean-Chr17:194131328 dispersed
Hean Hean-Chr17:194131328 Hean2g02793 Hean-Chr2:162282133 dispersed