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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean17g04539 ATGTGTGACAAGTGGGGCGTGGAGCCTGGGGGGTTTTACGAGCCTTATTACATCAAGGGAGAAGAATATCGAATACACATGTGTTTTGGTCTAGGCTGGGATCCGAAAACACCACCAGTTCCACAGCAACTTATTTCATTGGCTGCCAAAGCAGTCAAAGACGCTCAACCCCATCTGGATCAACTTCCTTCAATGTCCCCAAATACTTGTTTAGTCTGTTTCTATCCACTTTCCTGTGGTCGTATTGGTCTTCATCAGGATCGCCGCGACGAGAGTGGAAGACAATCATCCCCTGTGGTTTCCATCTTCATTGGTGAGGCTGCAGAATTTGTGTATCGCCTTTGTGGAGATAACAACAAGTTACGAAGTGTTTTGATGAAGTCTGGTGATGTATTGATATATGGTGGCAGGTCCAGACATATTTATCATGGTGTCACACAGAACATGCCTTTATTGTTATTACAAGAAACAGGGATTAAAGCAGGTTGTCTAAACCTTACTTTAACGCAGTTTTGA 516 43.8 MCDKWGVEPGGFYEPYYIKGEEYRIHMCFGLGWDPKTPPVPQQLISLAAKAVKDAQPHLDQLPSMSPNTCLVCFYPLSCGRIGLHQDRRDESGRQSSPVVSIFIGEAAEFVYRLCGDNNKLRSVLMKSGDVLIYGGRSRHIYHGVTQNMPLLLLQETGIKAGCLNLTLTQF 171
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean17g04539 171 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 66 171 IPR005123 -
Hean17g04539 171 Pfam 2OG-Fe(II) oxygenase superfamily 36 151 IPR027450 -
Hean17g04539 171 Gene3D - 1 171 IPR037151 -
Hean17g04539 171 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED 2 150 IPR004574 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0008198(PANTHER)|GO:0035513(PANTHER)|GO:0035515(PANTHER)|GO:0035516(PANTHER)|GO:0035552(PANTHER)
Hean17g04539 171 SUPERFAMILY Clavaminate synthase-like 33 147 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean17g04539 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr17:194402481 Hean9g03787 Hean-Chr9:169413916 dispersed
Hean Hean-Chr17:194395363 Hean17g04539 Hean-Chr17:194402481 tandem