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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean17g04540 ATGGTTATAGGGGTTAGTTTTTTCGGGCCTGATAGTGAGCATGTTATGAGTGGATCAGACTATGGTCATATTTTCGTATGGAAGAAAAAAGACGGTAGAGTTATTCGCATTATGGAAGGCAATAAGTGTATAGTGAATCAAGTTGAACCGCATCCTAATATCCCTGTGTTTGCGTCGTCTGGATTAGAAAAAGATATAACACTTTGGGCTCCTGTTTCTGATAACATTCCTCCCCTGGTTCATGAGTTACTTCATGTAACTAAACATGTTAATTATTTTTTCAAAAACAATATTATTATTATAGTCATAGTATAA 315 34.92 MVIGVSFFGPDSEHVMSGSDYGHIFVWKKKDGRVIRIMEGNKCIVNQVEPHPNIPVFASSGLEKDITLWAPVSDNIPPLVHELLHVTKHVNYFFKNNIIIIVIV 104
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean17g04540 104 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 4 73 IPR045151 GO:0005737(PANTHER)|GO:0080008(PANTHER)
Hean17g04540 104 Gene3D - 1 97 IPR015943 GO:0005515(InterPro)
Hean17g04540 104 SUPERFAMILY WD40 repeat-like 5 75 IPR036322 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean17g04540 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr17:194426682 Hean2g02486 Hean-Chr2:149591923 dispersed
Hean Hean-Chr17:194318547 Hean17g04540 Hean-Chr17:194426682 proximal
Hean Hean-Chr17:194426682 Hean17g04542 Hean-Chr17:194528043 proximal