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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean17g04541 ATGATTGTTGTTGAAGGGTCTGGTCTTGTAAGAAGGATTGGTCTTGCTGGTAAACTGATTGGGCATGAAGATTGGGTAAACACGATCGAGTTCAACCGCTGTGGTGATTGCCTGGTGTCGGGTTCTGATGACCGGCGAGTCATGTTGTGGAATGTGGCAAGTAAAGCTTTGGTCCTTTCGTATGATTCGGGTCATGCTAGAAATGTATTACAGGCTCGGATTATGCCATTTATTAATGACACGGTTATAGTAACTTCCGGTGGTGATGGTCAGGTGAGACTTGGTCAAGTAACAGATAACGGTAACCTTCAAACAATAGAATTAGGGAAGCACAATGGGCACGTTCACAAGCTTGCTGTTGAGCCTGGAAGTCCCCACATGTTTTACAGCTGTGGCGAGGACGGATTCGTTCAACGTGTAAGTTAA 426 45.54 MIVVEGSGLVRRIGLAGKLIGHEDWVNTIEFNRCGDCLVSGSDDRRVMLWNVASKALVLSYDSGHARNVLQARIMPFINDTVIVTSGGDGQVRLGQVTDNGNLQTIELGKHNGHVHKLAVEPGSPHMFYSCGEDGFVQRVS 141
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean17g04541 141 SMART WD40-4 99 141 IPR001680 GO:0005515(InterPro)
Hean17g04541 141 SMART WD40-4 12 51 IPR001680 GO:0005515(InterPro)
Hean17g04541 141 SMART WD40-4 54 96 IPR001680 GO:0005515(InterPro)
Hean17g04541 141 Gene3D - 9 141 IPR015943 GO:0005515(InterPro)
Hean17g04541 141 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 19 54 - -
Hean17g04541 141 SUPERFAMILY WD40 repeat-like 14 137 IPR036322 GO:0005515(InterPro)
Hean17g04541 141 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 7 139 IPR045151 GO:0005737(PANTHER)|GO:0080008(PANTHER)
Hean17g04541 141 ProSitePatterns Trp-Asp (WD) repeats signature. 38 52 IPR019775 -
Hean17g04541 141 Pfam WD domain, G-beta repeat 18 51 IPR001680 GO:0005515(InterPro)
Hean17g04541 141 ProSiteProfiles Trp-Asp (WD) repeats profile. 19 60 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean17g04541 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr17:194427055 Hean2g02486 Hean-Chr2:149591923 dispersed
Hean Hean-Chr17:194317074 Hean17g04541 Hean-Chr17:194427055 proximal
Hean Hean-Chr17:194427055 Hean17g04547 Hean-Chr17:194646171 proximal