AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00001 ATGGAACCACTTGCCAATGACAGTGGCGTGAGGGGTGAGGTTGACACGTCAGCACCGTTTGAGTCGGTTAAAGAGGCCGTGACCCGGTTCGGTGGAGTTGGGTTCTGGAAGCCCCATCAGAAGCAGCAGCAGCAGCATGTTCGTCATTCTGAGAATGGAACTGAAGAAGAATTTAATGCTGCTAAAGCTGAAGAGCAGGCTGTGCGGTTGGCAAACGAACTCATGATGAAAGAAAGGGAAACGCTACAAGTCTTGAAAGAACTCGAAGCCACAAAAACCACTGTTGAAGAGTTAAAACTCAAACTACTGAAAGAATCTGCTACAGTCAACGATCACGTACCAAGAGAGGGAAATGACAACAATACCCTTGACCCCCAATCAGCTGGTGACAACTTGATGTGCCCTTCTTCATCTCCAGGTTTCATCTTGATGGAATTGAAGCAGGCGAAACTCAACTTAACAAGAACAACAAGTGATCTTGCTGACATCAGATCGACTGTTGAAACGTATAACAAATTGATCGAGAAAGAAAGATTGGAACTTGAGAAAACCCGTCAACGATTATCTTCAAATTGTTCAAAAATTTCGTATTTCGAAAAAGACGTTGACTTTCCGAGGGAGATCCATAGGTTGACTTCTGAAACAGAGGAGTTCAAAAGGGTTGGGGAGGTAGCAAAATCACAAGTTTTAAAAGCAATGGATCAAATCAAACAAACAAAAAGAAATATAAAAACAGCCGAAATTCGTCTTCTTGCTGCTAGAAAGTTGAAGGAAGCTGCTAGAGCGAGTGAAGCGCTTGTGCGATCAGAAATAAACTCAATGTCAAAAAGTCAAACTTTATCCGAACACGAAGGGGTCACTCTTTCGCTTGATGAATACTCATGTTTAAAACAGAAAGCTCGAGAGGCAGATGAGGCTTTAGTTAGAAAAGTCAACGAATCAGTGGTCAAAGTCAACGAATCCGAGTTGTCAAAATCAGAGATGTTGACTAGGGTAGAGAAAGCAGCAGAAGAAGCGAAGAATAGTAAGACGATTCTAGAAGAAGCTTTGAGTAAAGTAGAAACCGCTAATAAGGAGAAACTAAAAGCTGAAGAAGCTCTAAGGAAATGGCGATCGGATCATGGTCAAAGAAGAAAGTCAACTGTTCAAAACTTGACCAAGTTCAAGAACTCTTCATGCAGGACCAACAGCACTCGTTTGCTGGACGTAAACGGGGTTCATTTGGGAACTAACACGCCTGGCCCGGTTTTGAGGCAAACGATGTCAATCGGGCAGATTTTGAGCCGGAAGTTGCTTTTGACAGAAGAGTATTCCGGCAAAAGCAATACGAAAAGGAAGGTTTCTTTGGCACAAATGTTGGGTAAACCTAATGACGGCGGTGGTGGTGACGGTGGGAAACGGCGATCAGGAAAGAGAAAGAAGTTCGGGTTCGGTAAGATTTCGTTTCTGGGAGCAAAGCCGAGCAAGAAGAAGAAGAAGAAACATAGCGTAAGTTCGCGACTTTCATGCACCGCGGATTAG 1521 43.59 MEPLANDSGVRGEVDTSAPFESVKEAVTRFGGVGFWKPHQKQQQQHVRHSENGTEEEFNAAKAEEQAVRLANELMMKERETLQVLKELEATKTTVEELKLKLLKESATVNDHVPREGNDNNTLDPQSAGDNLMCPSSSPGFILMELKQAKLNLTRTTSDLADIRSTVETYNKLIEKERLELEKTRQRLSSNCSKISYFEKDVDFPREIHRLTSETEEFKRVGEVAKSQVLKAMDQIKQTKRNIKTAEIRLLAARKLKEAARASEALVRSEINSMSKSQTLSEHEGVTLSLDEYSCLKQKAREADEALVRKVNESVVKVNESELSKSEMLTRVEKAAEEAKNSKTILEEALSKVETANKEKLKAEEALRKWRSDHGQRRKSTVQNLTKFKNSSCRTNSTRLLDVNGVHLGTNTPGPVLRQTMSIGQILSRKLLLTEEYSGKSNTKRKVSLAQMLGKPNDGGGGDGGKRRSGKRKKFGFGKISFLGAKPSKKKKKKHSVSSRLSCTAD 506
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00001 506 Coils Coil 167 191 - -
Hean1g00001 506 MobiDBLite consensus disorder prediction 443 506 - -
Hean1g00001 506 Coils Coil 60 80 - -
Hean1g00001 506 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 12 105 - GO:0005829(PANTHER)|GO:0009903(PANTHER)|GO:0009904(PANTHER)
Hean1g00001 506 MobiDBLite consensus disorder prediction 36 58 - -
Hean1g00001 506 Coils Coil 329 373 - -
Hean1g00001 506 Coils Coil 85 105 - -
Hean1g00001 506 MobiDBLite consensus disorder prediction 44 58 - -
Hean1g00001 506 Coils Coil 229 256 - -
Hean1g00001 506 Pfam Weak chloroplast movement under blue light 12 104 IPR008545 -
Hean1g00001 506 Pfam Weak chloroplast movement under blue light 151 377 IPR008545 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00001 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3207827 Hean Hean11g02917 Hean-Chr11:137312927 Hean1g00001 Hean-Chr1:117943
3222064 Hean Hean15g04266 Hean-Chr15:170870568 Hean1g00001 Hean-Chr1:117943
3228921 Hean Hean1g00001 Hean-Chr1:117943 Hean4g01168 Hean-Chr4:36928761
3269420 Hean Hean1g00001 Hean-Chr1:117943 Hean9g01781 Hean-Chr9:106000361