AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00006 ATGCTACAGGTTAAGGTAAAGGCTGCTCTTCTTCAGCAGTCAAAAACTCGGTTAATTGGTCCCAACTGTCCTGGTATCATTAAGCCTGGAGAATGCAAGATCGGTATTATGCCTGGTTACATTCACAAACTAGGGCGCATTGGTATTGTATCTCGGTCCGGCACGCTAACATATGAAGCGGAAGTTTGCTTCTTACACGAGGTTAACCGGATTCTAGCCTCGAATCGTCTGGAGCCATTCTCAAGGCTGGCAAGTGGAAAGTTCAACTACTTCTCAAAGGATTGCTTACAACCCTTCCAAGAAAGTTGTTTCATTGGTAAAGAATTTAGGCATATTTACAACCTTCAAAACCAAATGGTGATTATGATCATTGAGAAAAAAGAGTGGGTTGCCAATTATGAGCAGATGAAATCCACTGCAGAAATGGCTGAACTGACGCTAAAACATGAGCAATCTATCCATACGGCTGCTCTAGCTGAAGCAAAGCTAAGGGAAGAAAAACTGAAAAAGGCTTTTGGAATTGAAAAGGAATGTGTTTCCAATATTCCTTTTGAGCTCCAGCAAGGAGATAGTTCTCTTATGAGGTGA 588 41.84 MLQVKVKAALLQQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKLGRIGIVSRSGTLTYEAEVCFLHEVNRILASNRLEPFSRLASGKFNYFSKDCLQPFQESCFIGKEFRHIYNLQNQMVIMIIEKKEWVANYEQMKSTAEMAELTLKHEQSIHTAALAEAKLREEKLKKAFGIEKECVSNIPFELQQGDSSLMR 195
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00006 195 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 4 60 - GO:0004775(PANTHER)|GO:0004776(PANTHER)|GO:0005739(PANTHER)|GO:0006099(PANTHER)|GO:0009361(PANTHER)
Hean1g00006 195 Gene3D - 16 67 IPR016102 -
Hean1g00006 195 SUPERFAMILY Succinyl-CoA synthetase domains 22 60 IPR016102 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00006 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3228925 Hean Hean1g00006 Hean-Chr1:285113 Hean6g00892 Hean-Chr6:18505449
3269424 Hean Hean1g00006 Hean-Chr1:285113 Hean17g01038 Hean-Chr17:20702865