AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00009 ATGGGCAACTACAGGTTCAGATTCTCAAACATCATACCAAACTCATGGTTTTACACTTCTACCGCAACTAAAATTACCAAAACACAACCCATCACAACTTCATCTTCTTCATCATCTGTATCATCACAACCCGCAATACACCACAGAAAATCCTATTATTTCACTAGAGAGTTAAGTGTACCCGACCCGACGACCACCCCTGTTCAGGATCCGTCACCACCCGAGAGTCGCGGGCCCAGAAAGTCATCCAAGAAAAAAAGACCTACTACCCCGAAGAAACCAATTCGGCGAAAATTGATTTCTCCTGAGATTGAGATCGTACCGGAGTCTTTTGAAACGGACTCCATAGCAATTTTCTCGGATAACGAAGCTTTGTTGCCCGAACAACCGAGACCTGTTGGTTGTTCGTGCACAACAAATTCGTTAAACGAGGAGGTTTATGCGAGAGTTGACCTCCCGCGGATAATAACCAAACCTGTCAAACAGGATGAATTCGGGTCGGGTAAATGGGTGGTTAATGGAGGAAGTCGGGGCCGGGTTGTTAAAGAGGGCCTTATGGGTAGTCCGGTTAGAAAAGCGAAAGGAAACGGTTACTCACCGCGGTTAGGGAACCGGGTTAAGGTAAATGGAATAAGGAGGAGGAACGGGAACCGGCGGAGCTTGTCCGAAAGTTTGGCGGTTGTGAAAACATCCGCGGATCCCGGGAGGGATTTTAAGGAATCAATGGTTGAGATGATAATAGAGAACAATATTAAGAGTTCAAAAGATTTGGAAGATCTTCTTGCATGTTATCTTGCATTGAATTCTGATGAGTATCATGACTTGATCATCAAGGTATTCAAGCAGATTTGGTTCGAGTGTACTGATATTAGACTGTAG 879 44.82 MGNYRFRFSNIIPNSWFYTSTATKITKTQPITTSSSSSSVSSQPAIHHRKSYYFTRELSVPDPTTTPVQDPSPPESRGPRKSSKKKRPTTPKKPIRRKLISPEIEIVPESFETDSIAIFSDNEALLPEQPRPVGCSCTTNSLNEEVYARVDLPRIITKPVKQDEFGSGKWVVNGGSRGRVVKEGLMGSPVRKAKGNGYSPRLGNRVKVNGIRRRNGNRRSLSESLAVVKTSADPGRDFKESMVEMIIENNIKSSKDLEDLLACYLALNSDEYHDLIIKVFKQIWFECTDIRL 292
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00009 292 MobiDBLite consensus disorder prediction 57 98 - -
Hean1g00009 292 Pfam DNA-binding domain 1 42 IPR025830 GO:0003677(InterPro)
Hean1g00009 292 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 35 287 IPR038933 GO:0045892(InterPro)
Hean1g00009 292 NCBIfam uncharacterized plant-specific domain TIGR01568 226 286 IPR006458 -
Hean1g00009 292 ProSiteProfiles OVATE domain profile. 227 286 IPR006458 -
Hean1g00009 292 MobiDBLite consensus disorder prediction 80 94 - -
Hean1g00009 292 Pfam Transcriptional repressor, ovate 231 286 IPR006458 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00009 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3228927 Hean Hean1g00009 Hean-Chr1:356611 Hean4g01813 Hean-Chr4:71539253
3269426 Hean Hean1g00009 Hean-Chr1:356611 Hean8g02350 Hean-Chr8:82477919
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean Ovate 5.8e-24 No_clan TF OFP