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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00012 ATGGCAACGCCTAAACTGAATTTATTAATATGGAGAGCTTTCAACGAGAAGCTACCCACGGCTAAAGCTTTAAGGAGAAGAGGGGTGCAAATAGCATCAGAGGTATGTAAAGTGTGTGGTCTATCATCTGAATCGGCTAAGCATGTGTTTGTTCATTGCCCGTTCGCGAGGTTAGTATGGATTCAAATCTGGTTATGGCTTAAGATCCCAACAAGAAATCACATGGAGTCACTAAAAGAAAGGATGCTGGATCGAAGAGATTGGTCTAGGAAGAAAGCTAAAGTAATATTTGCCATTTATCTCTCAACCACATGGAACCTTTGGAAGAATAGAAACAACAAAGTGTTCAACAGTGCGACAACGGAGGTAAACAAATTACTTGAGGAGATAAAGGAGGAAACTTTCGACTGGATTAGCAGAAGATCAAAGTTACAAGGGGTCACCTGGCATGAATGGAGAAGTTTTTCGGTCCTTGATGTATAA 483 40.79 MATPKLNLLIWRAFNEKLPTAKALRRRGVQIASEVCKVCGLSSESAKHVFVHCPFARLVWIQIWLWLKIPTRNHMESLKERMLDRRDWSRKKAKVIFAIYLSTTWNLWKNRNNKVFNSATTEVNKLLEEIKEETFDWISRRSKLQGVTWHEWRSFSVLDV 160
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00012 160 PANTHER ZF-RVT DOMAIN-CONTAINING PROTEIN 21 131 - -
Hean1g00012 160 Pfam zinc-binding in reverse transcriptase 2 60 IPR026960 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00012 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3211565 Hean Hean12g03156 Hean-Chr12:137246901 Hean1g00012 Hean-Chr1:505043
3226437 Hean Hean17g01106 Hean-Chr17:22043181 Hean1g00012 Hean-Chr1:505043
3227412 Hean Hean17g02414 Hean-Chr17:69909893 Hean1g00012 Hean-Chr1:505043
3228930 Hean Hean1g00012 Hean-Chr1:505043 Hean16g00329 Hean-Chr16:6710052
3269429 Hean Hean1g00012 Hean-Chr1:505043 Hean17g02021 Hean-Chr17:53551601