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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00020 ATGACTACAATGATGATACCATTCAAGTTGTACTCGGGTGTTTCAGTTTCATTTTCTTCATCCAAATTCTTTCAAACTTCCCCACGCCGATCGACGACGACATTCCCAAGGATTTATGCATTTTCTAGTAATGATATAAAGGTGGGTTCCAACATAGAGGTAGATGGAGCTCCTTGGAAAGTTATAGAGTTTCTTCATGTGAAGCCTGGTAAAGGGGCTGCATATGTGAGGACTACTCTACGAAATCATATAACAGGAAATTCTGTTGAGAAAACTTTCCGCGCTGGAAGTAAGATTGAACAAGCTGAGGTCACTAAGGAGACAAAGCAATTCACATACAAGGATGGTTCACAGTTTGTTTTCATGGATCTGTCTACATACGAGGAAGTTCGTCTTAATGAGTCAGACATGGGAGATAATAAGAAATGGCTAAAAGAAGGCATGGACTGCAATTTGCTATTTTGGAAGGGAAAGGTTATCGATTTTGAGGTCCCGTTACAGATTAAAGTCAAAATAGTTGATGTTGATCCTGGTACCAAAGGTGAAGCAGCTCAAGGTGGATCAAAACCAGCGACTGTGGAAACAGGTGCTATTGTTTATGTTCCTTTGTTTGTAGACAGAGATCAAGAAATTATTGTGGATACAAGAACAGGGCAGTATGTAAGTCGCGTATGA 675 40.15 MTTMMIPFKLYSGVSVSFSSSKFFQTSPRRSTTTFPRIYAFSSNDIKVGSNIEVDGAPWKVIEFLHVKPGKGAAYVRTTLRNHITGNSVEKTFRAGSKIEQAEVTKETKQFTYKDGSQFVFMDLSTYEEVRLNESDMGDNKKWLKEGMDCNLLFWKGKVIDFEVPLQIKVKIVDVDPGTKGEAAQGGSKPATVETGAIVYVPLFVDRDQEIIVDTRTGQYVSRV 224
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00020 224 CDD S1-EF-P-repeat-2 168 223 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Hean1g00020 224 FunFam Elongation factor P 103 166 - -
Hean1g00020 224 Pfam Elongation factor P, C-terminal 169 223 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Hean1g00020 224 SUPERFAMILY Nucleic acid-binding proteins 168 224 IPR012340 -
Hean1g00020 224 Gene3D - 103 165 IPR012340 -
Hean1g00020 224 Pfam Elongation factor P (EF-P) OB domain 110 160 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Hean1g00020 224 Gene3D - 33 102 IPR014722 -
Hean1g00020 224 SMART EFP-2 106 160 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Hean1g00020 224 PIRSF EF-P 39 224 IPR020599 -
Hean1g00020 224 CDD S1-EF-P-repeat-1 105 165 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Hean1g00020 224 PANTHER ELONGATION FACTOR P 24 224 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Hean1g00020 224 SMART Elong-fact-P-C-2 168 223 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Hean1g00020 224 Gene3D - 168 224 IPR012340 -
Hean1g00020 224 FunFam Organellar elongation factor P 34 102 - -
Hean1g00020 224 FunFam Elongation factor P 167 224 - -
Hean1g00020 224 SUPERFAMILY Translation proteins SH3-like domain 37 100 IPR008991 -
Hean1g00020 224 ProSitePatterns Elongation factor P signature. 189 208 IPR013852 -
Hean1g00020 224 SUPERFAMILY Nucleic acid-binding proteins 104 167 IPR012340 -
Hean1g00020 224 Hamap Elongation factor P [efp]. 40 224 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Hean1g00020 224 NCBIfam elongation factor P 42 224 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Hean1g00020 224 Pfam Elongation factor P (EF-P) KOW-like domain 42 99 IPR013185 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00020 K02356 elongation factor P
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Event-related genes

Select Gene_1 Gene_2 Event_name
402270 Hean11g02537 Hean1g00020
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3207527 Hean Hean11g02537 Hean-Chr11:113831268 Hean1g00020 Hean-Chr1:764233