AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00099 ATGTCTTTTTACAAGTCAATGTCTGCACTTACCAGAGATTTTTTGGTTATTCCTCTTCATTTTTCAAAGATATGGTTATCTTCTGCTGTTGGTGATAATATGGTAGTCATAAAGAGTATCAACGAAAAGGTGTGGAATGTTAATTTCTCCAAGAACAATGGTACCTTTGCCTTTACAGAAGGATGGTCAAAGGTTGTATGTGACCTTTCTTTATCTGATGGTTGTATACTTCTTTTCAAGCAAGTTAATCCGTATAATTATATACTCACACCTTTTTTCAAGGAAACACCTTATCCACTATGTGATCCAGGCATCTCTTTGTTTCTATCCATCTCATCTTTGCCGAATAGGAATTACATAGAGTCGTTCTGTCATGTTTTCAATGATCAAAGTGTTAATACACTGCTTCTTCCTACGTTTGTTGTTAAAAACACTATTGGTGTTGGTAAACTTAGAAGACCAATGAAGGTTCATCTAAATTCATGGGACTCTTTAGATGTTTCTGTAGAGAAAGATTCTGATAGCAAATGTTACTTTTTTACCAATGGTTGGAACAACATTGTGCAACATCTAGGGGTTCGTACTCAAAATCTGGTTGTTTTACGCTATATCTTTGATTACAACTTTCAGTTGACATTGTTTGATGTGAATGGATATGAGGTTGTTATCCCTAGGCTTGCTTTAAAGTTTAATTCTGATCCTGGATTTCCATCTTCAACTCCGTTGGTAAACAATGTTGATGATTTTCATCGTGATGATGATATAAAATCTGAACTTGATCCGGAGGTAGATGTTTTAATTGAGCCATCTGATGCTGATGAATCCGTTGGTGGTAGTTCTGACAGTGATTTATCGGTTGATGATGATTTCGATGATGATGACTTTGAAGATTCTACCTCTGAATCTGATGATGACAAAAAGGACCCCGATTATCAGCCTTTAGAATTTGAATGGGAGTATCATCCACGTCATTTCCGACTGAATAGCAAAGTTGCAAGTCTAGCTCGTGTTGATGTATCTGGGAAGATGACAGTTCAAAATCTGGCTGGCGTTGATACTGTTATTACTTTTCGACCAGAGGTACATGGTGGAGGATTCAGATATGTTGCGAATGCATGGCGTACCAAGTTCACAAAGCCTAATGGGATCAATGCACCTCATAGATGCACTTTTGTATACTCTCCTGATGAAGATAAGTTGATTTTGAAGAAAGTTTCGAAGTAG 1224 36.93 MSFYKSMSALTRDFLVIPLHFSKIWLSSAVGDNMVVIKSINEKVWNVNFSKNNGTFAFTEGWSKVVCDLSLSDGCILLFKQVNPYNYILTPFFKETPYPLCDPGISLFLSISSLPNRNYIESFCHVFNDQSVNTLLLPTFVVKNTIGVGKLRRPMKVHLNSWDSLDVSVEKDSDSKCYFFTNGWNNIVQHLGVRTQNLVVLRYIFDYNFQLTLFDVNGYEVVIPRLALKFNSDPGFPSSTPLVNNVDDFHRDDDIKSELDPEVDVLIEPSDADESVGGSSDSDLSVDDDFDDDDFEDSTSESDDDKKDPDYQPLEFEWEYHPRHFRLNSKVASLARVDVSGKMTVQNLAGVDTVITFRPEVHGGGFRYVANAWRTKFTKPNGINAPHRCTFVYSPDEDKLILKKVSK 407
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00099 407 Pfam B3 DNA binding domain 6 81 IPR003340 GO:0003677(InterPro)
Hean1g00099 407 Gene3D - 1 92 IPR015300 -
Hean1g00099 407 Gene3D - 117 218 IPR015300 -
Hean1g00099 407 SUPERFAMILY DNA-binding pseudobarrel domain 122 221 IPR015300 -
Hean1g00099 407 MobiDBLite consensus disorder prediction 267 311 - -
Hean1g00099 407 SUPERFAMILY DNA-binding pseudobarrel domain 3 92 IPR015300 -
Hean1g00099 407 PANTHER B3 DOMAIN-CONTAINING 122 350 IPR050655 -
Hean1g00099 407 SMART B3-2 3 95 IPR003340 GO:0003677(InterPro)
Hean1g00099 407 SMART B3-2 123 217 IPR003340 GO:0003677(InterPro)
Hean1g00099 407 MobiDBLite consensus disorder prediction 284 301 - -
Hean1g00099 407 CDD B3-DNA 2 83 IPR003340 GO:0003677(InterPro)
Hean1g00099 407 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00099 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3209744 Hean Hean12g00740 Hean-Chr12:14208087 Hean1g00099 Hean-Chr1:2125580
3211661 Hean Hean12g03291 Hean-Chr12:146125274 Hean1g00099 Hean-Chr1:2125580
3220828 Hean Hean15g02575 Hean-Chr15:79669724 Hean1g00099 Hean-Chr1:2125580
3223155 Hean Hean16g01290 Hean-Chr16:48437490 Hean1g00099 Hean-Chr1:2125580
3224754 Hean Hean16g03525 Hean-Chr16:171366006 Hean1g00099 Hean-Chr1:2125580
3228526 Hean Hean17g03991 Hean-Chr17:171401939 Hean1g00099 Hean-Chr1:2125580
3228989 Hean Hean1g00099 Hean-Chr1:2125580 Hean5g01042 Hean-Chr5:46560135
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean B3 6.5e-09 CL0405 TF B3