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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00108 ATGGATGCAGTAAAAAACTTAGATGCTGTGGATGCAACAACATCCTTTCAAGTCAAATCCTTCTTTGACTCAGCGCCTCTTTTGAAAGATGCTGAAAGCATAAGCAGAAAATTAACCCAATTTATCCACCAGAACGCTTCTTTAACAGGAAGTAAAGGACCTAGAAGGGTTGTATGTGTGACATCTGGCGGTACAACTGTTCCTTTAGAGCAACGCTGTGTACGTTACATTGATAACTTTAGCTCTGGACATAGAGGAGCAACTTCTACAGAATACTTTTTGAAGTCAGGATATTCGGTCATCTTTCTCTATAGGAGGGGAACCTGCCAGCCGTATTGTAGATCACTTCCAGATGATCCGCTACTCGAATGTTTCAACCTCACTAGCGATTCAAGCATACAAGTGCTCGAGTCACACGCTGAAGCAGTTAAGAGTGCAATTAGTGGTCATCACGATGTTGTTTCTGGAGGCTACTTGCTGAAACTTCCTTTCACAACCATCTTTGAATATCTTCAGATTTTAAGGTTGATTGCAACACCAATGAAGATCCTTGGACCAAATGCTATGTTTTATCTTGCAGCCGCTGTATCTGACTTTTATGTTCCGTGGGAGAGCATGGCAGTACATAAAATCCAGTCAGCATCTGGTCCTCTAGATATGCGGCTTGCCCAAGTTCCGAAAATGCTCTTGGTTTTGCGTAAGGAGTGGGCCCCCACAGCATTCTGTGTATCATTTAAGTTAGAGACAGATAAAGAGATTCTTCTAGAAAAGGCGGATACCGCTCTTAAAAAGTACAAAATGCATGCGGTAGTTGCTAACGAGCTTTCGACCCGTAAAGAGGTGGTCATATTGGTCACTGAAAGCGGAAAAGTGTCGGTGTATCGTGAAAACGACCTATCAGTTGTTGAATCTCCTCTGATCAAGCTACTTGTAGAGAAACATTCAACTTACATTATGGACCCCAACGCATGA 972 42.59 MDAVKNLDAVDATTSFQVKSFFDSAPLLKDAESISRKLTQFIHQNASLTGSKGPRRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGATSTEYFLKSGYSVIFLYRRGTCQPYCRSLPDDPLLECFNLTSDSSIQVLESHAEAVKSAISGHHDVVSGGYLLKLPFTTIFEYLQILRLIATPMKILGPNAMFYLAAAVSDFYVPWESMAVHKIQSASGPLDMRLAQVPKMLLVLRKEWAPTAFCVSFKLETDKEILLEKADTALKKYKMHAVVANELSTRKEVVILVTESGKVSVYRENDLSVVESPLIKLLVEKHSTYIMDPNA 323
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00108 323 FunFam Phosphopantothenate--cysteine ligase 2 34 322 - -
Hean1g00108 323 PANTHER CORNICHON-RELATED 73 315 - GO:0004632(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0015937(PANTHER)
Hean1g00108 323 Pfam DNA - pantothenate metabolism flavoprotein 178 280 IPR007085 -
Hean1g00108 323 Gene3D - 34 321 IPR035929 -
Hean1g00108 323 SUPERFAMILY CoaB-like 49 318 IPR035929 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00108 K01922 phosphopantothenate---cysteine ligase (ATP) [EC:6.3.2.51]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:2248175 Hean5g03664 Hean-Chr5:175865912 dispersed
Hean Hean-Chr1:2248175 Hean1g00109 Hean-Chr1:2255417 tandem