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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00109 ATGTTTGCAGGGGAACCTGCCAGCCGTATTGTAGATCACTTCCAGATGATCCGCTACTCGAATGTTTCAACCTCACCAGCGATTCAAGCATACAAGCCACACGCTGAAGCAGTTAAGAGTGCAATTAGTGGTCATCACGATGCTGTTTCTGGAGGCTACTTGCTGAAACTTCCTTTTACAACCATCTTTGAAAAACTTCAGATTTTAAGGTTGATTGCAACATCAATGAAGATCCTTGGACCAAATACTATGTTTTATCTTGTAGCCGTTGTATCTGACTTTTATGTTCCATGGGAGAGCATGGCAGTACATAAAATCCAGTCAGCATCTGGTCCTCTAGATATGCGACTTGCCCAAGTTCCGAAAATGCTCTTGGTTTTGCGTAAGGAGTGGGCCCCGGCAGCATTCTGTGTATCATTTAAGTTAGAGACAGATAAAGAGATTCTTCTAGAAAAGGCGGACACCGCTCTTAAAACGTACAAAATGCATGCGGTAGTTGCTAACGAGCTTTCGACCCGTAAAGAGGTGGTCATATTGGTCACTGAAAGCGGCAAAGTGCGAGTGTATCGTGAAAACGACCAACCAGTTGTTGAATCTCCTCTGATCAAGCTACTTGTAGAGAAACAAATGGTGGTTGCGCAATGTTAA 648 43.67 MFAGEPASRIVDHFQMIRYSNVSTSPAIQAYKPHAEAVKSAISGHHDAVSGGYLLKLPFTTIFEKLQILRLIATSMKILGPNTMFYLVAVVSDFYVPWESMAVHKIQSASGPLDMRLAQVPKMLLVLRKEWAPAAFCVSFKLETDKEILLEKADTALKTYKMHAVVANELSTRKEVVILVTESGKVRVYRENDQPVVESPLIKLLVEKQMVVAQC 215
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00109 215 SUPERFAMILY CoaB-like 16 207 IPR035929 -
Hean1g00109 215 Gene3D - 2 214 IPR035929 -
Hean1g00109 215 PANTHER CORNICHON-RELATED 45 197 - GO:0004632(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0015937(PANTHER)
Hean1g00109 215 Pfam DNA - pantothenate metabolism flavoprotein 74 175 IPR007085 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00109 K01922 phosphopantothenate---cysteine ligase (ATP) [EC:6.3.2.51]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3228998 Hean Hean1g00109 Hean-Chr1:2255417 Hean5g03664 Hean-Chr5:175865912
3257891 Hean Hean1g00108 Hean-Chr1:2248175 Hean1g00109 Hean-Chr1:2255417