AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00137 ATGGAAGCTAGTGACGTAACTTCACCGGCGTTAACATCTCCGTCGATAAAACCGATCAACAAGAACGCTATTCACAGAATCTGCTCCGGTCAAGTGATTCTGGACCTACCATCCGCCGTTAAGGAGCTGGTGGAGAACAGCCTGGACGCAGGAGCCACCAGCATCGAGGTTTCGTTGAAAGAATACGGTGAAGAATCGTTTCAGGTTGTTGATAACGGTTGCGGCATTTCACCGAACAACTTCAAGGTTCTAGCACTTAAGCATCATACGTCGAAACTGTCCGATTTTCCTGACCTTCAATCATTGACGACTTTCGGGTTTAGAGGGGAGGCTCTTAGTGCTCTGTGTAACTTAGGGGAGTTGACAGTGGAAACGAGAACACAAAATGAGAAGGTTGCGACACACTTGAGTTTTGACCGGTTTGGTTTGGTTACCGATGAGAGAACAACTGCTCGGCAGGTTGGAACGACTGTTACCGTGAAAAAATTGTTCTCCAACTTGCCTGTGAGATGTAAGGAGTTTCATCGTAACATTAGAAAGGAGTACGGGAAATTAATTTCGTTACTAAATGCGTACGCTCTTACTGCAAAAGGGGTTCGTTTGGTGTGCAAAAATACAACCGGAAAAAACAAAAGTACAGTAGTACTTAAAACACAGGGAAGCGGTTCACTCAAAGATAACATCATTACAGTGTTTGGAACAAACACTTTCACCTGCTTAGAGCCCGTGAGTCTATTTATATCAGAAACATGCCAAGTGGATGGCTTTCTTTCTAAATCTGGCAATGGTAGTGGACGAAGTTTAGGCGATCGACAATTTTTTTTCGTTAACGGCCGACCTGTTGACATGCCAAAAGTCAGCAAGCTTGTGAATGAATTGTATAGATCCGCAAACTCAAAGCAATATCCGGTTGCAATCATGAATTTTGTTGTTCCGACTAGGGTTTGTGATGTCAATGTAACCCCAGATAAACGAAAAGTATTTTTTACCGATGAAGGGTCGATTTTAAGTTCGTTAAAAGAAGCTTTGTTGAAGATATATTCCCCAAATCTTGCTAGCTTTTCAGTACAGAAAGCTGATAGTGATTTTAAAAAAGAAACTAGCAGTGTTGTGATTGAAGATAACGAGACCGCTGGATCGCCACCTGTTGTTAATCTGATTGACGTTGATGATTATAGTTTGTCGAAGAGAGATTTTACACTAAAATTTCATGGTGTGAAGAAAACCGATAACGTTACTAGGGGTTATAGTAAGAATCATACAGTTGTAACGAGCAACACTACTTATAATCGGCAGTCATCATCATTATCATCATCGTACAACCCAACGACGCATAAAAGTGTTGATGAAGGAACGGATTCACCTCGATCTGTGAGTCGCGTTCAGTCACTGCTTACATCATTTGTTGCTGTAAACAAAAGAAAGCATGAAAGCATCGGTAATACTTTATCTGAGGTCCCCGTTCTTAGAAACGGGCCCACCATTCGTCAATCAGTTGATCAAAGAAATAGTTCAAGTTCTGCATTTGCAAAATCTTTAGTGAAATGCCATGTGGTTGATGACTCTGATGAAGTTGACCAGAACGAGTCAAAGTTAAAGCCTTTCAATCGTACTCTAGTGGATGAACACAATGATGAAGTTGACCAGAACGAGTCAAAGTTAAAGCCTTTCAATCGTACTCTAGTGGATGAACACAATGATGATTTAGAAGCCTCACCTGTTAACGTTGTTAAAACTTCTGAACAAGTTGAAAAGGACATAATAAGAATTGAGACGCCTAAATCTATTTCAAAATCAGCGTTAGACGCTTCATCTCCCGAAAAAATTAATGATGATATGTCAACTCCGTTAACTGCTTCTGAACCACCTTTAGATTCACCGATGTCTTCTTCTCGTTCGAAGATGTGTTATGAGATGCAGTTCAGTTTTGAGGAATTAAAGAAAAAGAGGCAGCAAAAATTAGCAGCATTTCAAGCAAGCAAAAATACACTCGGAGTATCAAAGACTAACGGATGCTATGCTGACGCTTCATTAGAACTTTCTCAAGTGGTAGAAGAGGATGCTAAAGCTCAAGCTTTATCTGCAGCAGTGAGTGAATTAGAAAAGTTATTCAAGAAGGAAGATTTTGGCCGCATGAAGGTTATTGGGCAGTTCAATCTTGGATTTATCATTGGCAAGTTAGAGCAAGACCTCTTTATTGTAGATCAGCATGCTGCGGATGAGAAATACAATTACGAGCGTTTGTCACAGTCCACCATCTTAAACCAACAACCTTTACTAAAGCCAATTCCGGTAGAGTTATCTCCTGAAGAAGAAATAATCGCATCAATACACATGGATACTATCAGGAAAAATGGGTTTTCGTTAGAAGAAGACGCAGATGCTCCTCCTGGGAACCGCTATAAATTAAAAGCCGTCCCTTTTAGTAAAAACATAACTTTTGGTGCTGCAGATGTGAAGGAGCTTATATCTATTTTGGCTGATAGTGAAGGCGAATGTTCAATTATGGGTACTTATAAGATGGACACTACGGATTCGGTGTGTCCTCCAAGAGTACGTGCAATGTTGGCATCACGTGCCTGTAAATCGTCTGTTAGGATTGGAGATCCACTTGGAAGAAACGAGATGCAAAAGATAGTTGAACATTTGAGGGGCTTAAGATCACCATGGAATTGTCCACATGGCCGACCGACAATGCGACACTTGGTGGATTTAAGGACCCTGCGTAAAAGGTCAGACGAAGACGATATAGTATTATAG 2760 40.91 MEASDVTSPALTSPSIKPINKNAIHRICSGQVILDLPSAVKELVENSLDAGATSIEVSLKEYGEESFQVVDNGCGISPNNFKVLALKHHTSKLSDFPDLQSLTTFGFRGEALSALCNLGELTVETRTQNEKVATHLSFDRFGLVTDERTTARQVGTTVTVKKLFSNLPVRCKEFHRNIRKEYGKLISLLNAYALTAKGVRLVCKNTTGKNKSTVVLKTQGSGSLKDNIITVFGTNTFTCLEPVSLFISETCQVDGFLSKSGNGSGRSLGDRQFFFVNGRPVDMPKVSKLVNELYRSANSKQYPVAIMNFVVPTRVCDVNVTPDKRKVFFTDEGSILSSLKEALLKIYSPNLASFSVQKADSDFKKETSSVVIEDNETAGSPPVVNLIDVDDYSLSKRDFTLKFHGVKKTDNVTRGYSKNHTVVTSNTTYNRQSSSLSSSYNPTTHKSVDEGTDSPRSVSRVQSLLTSFVAVNKRKHESIGNTLSEVPVLRNGPTIRQSVDQRNSSSSAFAKSLVKCHVVDDSDEVDQNESKLKPFNRTLVDEHNDEVDQNESKLKPFNRTLVDEHNDDLEASPVNVVKTSEQVEKDIIRIETPKSISKSALDASSPEKINDDMSTPLTASEPPLDSPMSSSRSKMCYEMQFSFEELKKKRQQKLAAFQASKNTLGVSKTNGCYADASLELSQVVEEDAKAQALSAAVSELEKLFKKEDFGRMKVIGQFNLGFIIGKLEQDLFIVDQHAADEKYNYERLSQSTILNQQPLLKPIPVELSPEEEIIASIHMDTIRKNGFSLEEDADAPPGNRYKLKAVPFSKNITFGAADVKELISILADSEGECSIMGTYKMDTTDSVCPPRVRAMLASRACKSSVRIGDPLGRNEMQKIVEHLRGLRSPWNCPHGRPTMRHLVDLRTLRKRSDEDDIVL 919
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00137 919 Gene3D - 754 866 IPR042121 -
Hean1g00137 919 SMART MutL-C-2 714 871 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Hean1g00137 919 MobiDBLite consensus disorder prediction 596 631 - -
Hean1g00137 919 FunFam Mismatch repair endonuclease pms1, putative 754 866 - -
Hean1g00137 919 CDD HATPase-MutL-MLH-PMS-like 24 205 - -
Hean1g00137 919 SMART DNA-mis-repair-2 228 348 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Hean1g00137 919 Gene3D - 239 351 IPR014721 -
Hean1g00137 919 NCBIfam DNA mismatch repair endonuclease MutL 16 452 IPR002099 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Hean1g00137 919 SUPERFAMILY DNA mismatch repair protein MutL 710 902 IPR037198 -
Hean1g00137 919 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 16 910 IPR038973 GO:0006298(PANTHER)|GO:0006298(InterPro)|GO:0016887(InterPro)|GO:0016887(PANTHER)|GO:0032300(PANTHER)|GO:0032300(InterPro)|GO:0032389(PANTHER)|GO:0140664(InterPro)
Hean1g00137 919 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 38 139 - -
Hean1g00137 919 Pfam MutL C terminal dimerisation domain 715 871 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Hean1g00137 919 MobiDBLite consensus disorder prediction 597 631 - -
Hean1g00137 919 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 30 231 IPR036890 -
Hean1g00137 919 Pfam DNA mismatch repair protein, C-terminal domain 228 347 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Hean1g00137 919 Gene3D - 717 902 IPR042120 -
Hean1g00137 919 FunFam DNA mismatch repair protein PMS1 234 353 - -
Hean1g00137 919 Gene3D - 12 232 IPR036890 -
Hean1g00137 919 ProSitePatterns DNA mismatch repair proteins mutL - hexB - PMS1 signature. 106 112 IPR014762 -
Hean1g00137 919 MobiDBLite consensus disorder prediction 423 457 - -
Hean1g00137 919 CDD MutL-Trans-hPMS-2-like 223 348 - -
Hean1g00137 919 FunFam Mismatch repair endonuclease pms1, putative 13 232 - -
Hean1g00137 919 SUPERFAMILY Ribosomal protein S5 domain 2-like 210 348 IPR020568 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00137 K10858 DNA mismatch repair protein PMS2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr14:115062604 Hean1g00137 Hean-Chr1:2871597 dispersed
Hean Hean-Chr1:2871597 Hean9g03530 Hean-Chr9:162444897 dispersed