AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00179 ATGTTTAGGGAGTTCATCAGAACTTTAACTGCTATCATTGCTGCTTTTCTTGCTTTGGCGGGAGCTGCATGGTCCTTGAATTTTTTTTTCATTGCTTCTTTCTGCCTATTTAATTCTATCTATTGGTTGTTTATTTATAGTAATACTCTGTATCTCTTTATTATTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATTACGTTTATTAGAAGTGGACAATCGAGTGGTTGTACCAGCCAAAAGTCATCTACGTATTATTGTAACATCTGCTGATGTACTTCATAGTTGGGCTGTACCTTCCTCAGGTGTAAAATGTGATGCTGTACCTGGTCATAATATGTTACAAAAAAAAGGTTGGTTAAAACCAAGGTGGGAAACCCCTGATTTCCTATTTATCTTTCTGTTGGGAATCTTCCTTCCCCTGCCGTCATTGGCATTTTGTTCTGGGAATCCAGAGACTCCCCCCATCGATACCTCCGGGTTCTTTGCGGAACCCCCTGCCCCCTATGCTTGGCAACAAAATGGGCAAGTGGGTCCGGTTATAGCGGAACCGCAGCAGATTCCGGCGGCTATCGACCCGGAACCCTTATGGGCAGACGAGGTCCGCCGAAGAGCTCTCCGGACCCGCTTGGATCTGCGGAATCAACTAAATATCCGGCCGCTTAGTCCGCAGGTTATGACGCAAATTATAGACTATCAAATCTTGGTCGAGAGGGAAATAGAGAAGTACCTATTAGCCCAAGGGTACCACCGGGCTAATTTGGTGCGGAATTGGCTCGAGATACGGCAACAAATCTTTTCTGGGGAGCGGTTCACAGTCCGCAACTATCAGAGGCTCTGGGGAACCATTCAAGATTTTGGAATTGAGAATTCCGCCCCCCTCCAGAGGGTTCGCCGAGGGAATCATTTACTATAA 951 45.32 MFREFIRTLTAIIAAFLALAGAAWSLNFFFIASFCLFNSIYWLFIYSNTLYLFIISDEQSLTFDSYTIPEDDLELGQLRLLEVDNRVVVPAKSHLRIIVTSADVLHSWAVPSSGVKCDAVPGHNMLQKKGWLKPRWETPDFLFIFLLGIFLPLPSLAFCSGNPETPPIDTSGFFAEPPAPYAWQQNGQVGPVIAEPQQIPAAIDPEPLWADEVRRRALRTRLDLRNQLNIRPLSPQVMTQIIDYQILVEREIEKYLLAQGYHRANLVRNWLEIRQQIFSGERFTVRNYQRLWGTIQDFGIENSAPLQRVRRGNHLL 316
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00179 316 ProSiteProfiles Cytochrome oxidase subunit II copper A binding domain profile. 28 186 IPR002429 GO:0004129(InterPro)|GO:0005507(InterPro)|GO:0016020(InterPro)
Hean1g00179 316 SUPERFAMILY Cupredoxins 41 124 IPR008972 -
Hean1g00179 316 Gene3D - 38 141 IPR008972 -
Hean1g00179 316 PANTHER CYTOCHROME C OXIDASE, SUBUNIT II 41 123 IPR045187 GO:0004129(InterPro)|GO:0004129(PANTHER)|GO:0042773(PANTHER)
Hean1g00179 316 Pfam Cytochrome C oxidase subunit II, periplasmic domain 54 123 IPR002429 GO:0004129(InterPro)|GO:0005507(InterPro)|GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00179 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:4590008 Hean1g01553 Hean-Chr1:76183751 dispersed