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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00187 ATGAAGAAGAAGATCCGAACTCATTTGGCATTTCTCATGTCTGACTTGATCATCGTGGCATTGTTGTTCTCTGCCAACGGAGCCGCCACTGCGGTGGGCATGATCGGCCTCAATGGCAACTCTCATACACAATGGCATAAGGTGTGTTATATTTTCAAGAGGTATTGCCACCAGGGTGCAGCCTCTGTAACCATGTCCTTCCTTGGCTCATTTGCGTTTTTATGGCTTGTGGTTTTTGCAATTCTAAAAATTCCATAA 258 44.96 MKKKIRTHLAFLMSDLIIVALLFSANGAATAVGMIGLNGNSHTQWHKVCYIFKRYCHQGAASVTMSFLGSFAFLWLVVFAILKIP 85
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00187 85 NCBIfam plant integral membrane protein TIGR01569 4 83 IPR006459 -
Hean1g00187 85 PANTHER CASP-LIKE PROTEIN 1U1 4 84 IPR044173 -
Hean1g00187 85 Pfam Casparian strip membrane protein domain 6 71 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00187 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:4793580 Hean3g02912 Hean-Chr3:147135064 dispersed
Hean Hean-Chr1:4793580 Hean6g01226 Hean-Chr6:27837150 transposed