AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00223 ATGACGAAAAAGCTCGTGAAATACTCCGTTGTGGATGCATTTACAGACACGCCGTTTAAAGGAAACCCAGCGGCTGTGTGTTTGTTAGATGACACTGAGAAAGATGATAAGTGGTTGCAATCAGTTGCAGCTGAATTTAACATCTCCGAGACTTGTTACTTGACTCCGGTTGCCGGTTCCAGATTTAATCTCAGATGGTTCACACCTGTAGCTGAGGTGGAGCTTTGTGGTCATGCAACTTTAGCAGCCTCCCACTTTCTTTTTAACTCTGGCTTGGTAAATTCTAACACAATCGAATTCTCAACACTTTCCGGAATTTTAACTGCCAAAAGAATCCCGGCTAACAAGATCAACGGCGAATCAGAAGATAGTTTCTACATAGAGTTAGATTTCCCTGTTGTGCCGGTTTCAGATTACAATGATCTTGAGGTTTCTGCAATTTCGGAAATACTAAACGGTGTTTCCGTTGTTGATGTGAAGACAAACACACTAGATGATATCTATGTGGAGCTTTCATCAGCGAAAGAACTGGTGGAGCTCAAGCCGCAAATTAATAAGATTAAAGCAGCCCCGGGTAGAGGGATAGTAATTACAGCGCGTGCGCCTGACGGGTCAGGGTTTGACTTTTATAGTCGCTTCTTCTGCCCGAAATACGGAATTGACGAGGATCCTGTTTGTGGGAGTGCACATTGCGCGTTAGCAGACTATTGGCATGAGAAGTTGGGGAAATGCGATTTTGTTGCATATCAGGCATCACCTAGGAGTGGCGTATTGCACGTCCATCTCGATAAGGAGAATCAAAGAGTACTTCTTCGAGGTAAAGCCACCACAGTCATGGAAGGATCTCTTTTGGTCTAA 858 44.17 MTKKLVKYSVVDAFTDTPFKGNPAAVCLLDDTEKDDKWLQSVAAEFNISETCYLTPVAGSRFNLRWFTPVAEVELCGHATLAASHFLFNSGLVNSNTIEFSTLSGILTAKRIPANKINGESEDSFYIELDFPVVPVSDYNDLEVSAISEILNGVSVVDVKTNTLDDIYVELSSAKELVELKPQINKIKAAPGRGIVITARAPDGSGFDFYSRFFCPKYGIDEDPVCGSAHCALADYWHEKLGKCDFVAYQASPRSGVLHVHLDKENQRVLLRGKATTVMEGSLLV 285
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00223 285 PIRSF Ismrse-PhzF 4 285 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Hean1g00223 285 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 285 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Hean1g00223 285 Pfam Phenazine biosynthesis-like protein 11 281 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Hean1g00223 285 NCBIfam PhzF family phenazine biosynthesis isomerase 8 283 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Hean1g00223 285 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 10 281 - -
Hean1g00223 285 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 133 273 - -
Hean1g00223 285 SUPERFAMILY Diaminopimelate epimerase-like 7 284 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00223 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:6049010 Hean1g00223 Hean-Chr1:6058926 dispersed
Hean Hean-Chr1:6058926 Hean5g02872 Hean-Chr5:155121292 dispersed
Hean Hean-Chr1:6053357 Hean1g00223 Hean-Chr1:6058926 tandem