AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00241 ATGGGTAGACCGTACACAGACCCATCACGCCCATCTGCACCATCATCATCATCCTCCACAACGTCATCACCACCGGTGCTGACGACATCAATGTCAGTTACAGAAACAGTGAAGGGAGAACACAATTTCAAGATATCGGGGTACTCGTTATCGAAGGGGATAGGGATCGGGAAATATGTAGCGTCTGATACGTTTACGGTGGGTGGGTATTCATGGGCGGTGTATTTTTACCCGGATGGGAAGAGTGTGGAGGACAATGGGAGTTACGTGTCGTTGTTTATCGCGTTGGCGAGTGAAGGGTCGGATGTTCGGGCTTTGTTTGAGTTGACTTTGGTTGATCAGAGTGGGAATGAGAGGCATAAGGTTCATAGTCATTTCGGGAGAGCGTTGGAGAGCGGGCCCTATACGCTTAAGTACCGCGGTAGCATGTGGGGATACAAGCGGTTTTTCAAAAGATCCGCTTTAGAAACATCAGACTACCTAAAAGACGATTGCCTTCAAGTTCATTGCTGCGTCGGTGTGGTCAAGTCCCACACCGAGGGTCCTAAGTCCTACTCGATTCACGTGCCACCTTCAGATATCGGGCAGCATTTCGGGCAGCTTCTGGAACATGGAAAATGGACCGATGTCTCTTTTGAAGTAAACGGAGAAACCTTTGCTGCCCATAAATTGGTTCTCGCAGCCCGCTCACCTGTTTTCAGGGCCCAACTTTTTGGCCCAATGAAAGATCAAAACGTCAAGTGTATCAAAGTTGAAGACATTGAAGCCCCGGTTTTTAAGGCGCTGCTGCATTTTATATACTGGGAAAAACTGCCCGACATGGAAGAGCTAACGGGCCTGAATACAAAATGGGCTTCAACTTTGATGTATCAGCATCTGCTTGCAGCTGCCGATCGATACGGTTTAGAGAGGCTTTGTATGTTATGTGAATCTAATCTTTGTGAAGGTGTCGCCATTAATACAGTTGCAACAACATTAGCATTGGCCGAACAACACCATTGCCTCCAGTTAAAGTCCGTTTGTCTAAAATTTGTCGCATTGCCCGAGAATCTCAGAGCTGTGATGCAGACCGACGGGTTTGACTACTTAAAAGAAAGCTGTCCTGATGTGTTGACGGAGCTGTTGGAACAAGTGGCTAGAAACAACGAGCATTCTCTAGCTGTTTGCAGTCACCCAAATGCGATTATACTCGATGGAAGTGATGTTCATGGTAGACGGGTTAAACCCAGACTGTAA 1236 47.25 MGRPYTDPSRPSAPSSSSSTTSSPPVLTTSMSVTETVKGEHNFKISGYSLSKGIGIGKYVASDTFTVGGYSWAVYFYPDGKSVEDNGSYVSLFIALASEGSDVRALFELTLVDQSGNERHKVHSHFGRALESGPYTLKYRGSMWGYKRFFKRSALETSDYLKDDCLQVHCCVGVVKSHTEGPKSYSIHVPPSDIGQHFGQLLEHGKWTDVSFEVNGETFAAHKLVLAARSPVFRAQLFGPMKDQNVKCIKVEDIEAPVFKALLHFIYWEKLPDMEELTGLNTKWASTLMYQHLLAAADRYGLERLCMLCESNLCEGVAINTVATTLALAEQHHCLQLKSVCLKFVALPENLRAVMQTDGFDYLKESCPDVLTELLEQVARNNEHSLAVCSHPNAIILDGSDVHGRRVKPRL 411
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00241 411 FunFam BTB-POZ and math domain 1 184 311 - -
Hean1g00241 411 FunFam BTB-POZ and math domain 1 317 395 - -
Hean1g00241 411 ProSiteProfiles BTB domain profile. 208 275 IPR000210 GO:0005515(InterPro)
Hean1g00241 411 SMART math-3 43 155 IPR002083 GO:0005515(InterPro)
Hean1g00241 411 CDD MATH 39 172 IPR002083 GO:0005515(InterPro)
Hean1g00241 411 SUPERFAMILY TRAF domain-like 35 174 - -
Hean1g00241 411 CDD BTB-POZ-BPM-plant 194 314 - -
Hean1g00241 411 Pfam MATH domain 41 172 IPR002083 GO:0005515(InterPro)
Hean1g00241 411 Gene3D - 317 392 - -
Hean1g00241 411 MobiDBLite consensus disorder prediction 9 27 - -
Hean1g00241 411 Gene3D Potassium Channel Kv1.1; Chain A 184 311 IPR011333 -
Hean1g00241 411 CDD BACK-AtBPM-like 314 376 IPR034090 -
Hean1g00241 411 MobiDBLite consensus disorder prediction 1 27 - -
Hean1g00241 411 ProSiteProfiles MATH-TRAF domain profile. 38 172 IPR002083 GO:0005515(InterPro)
Hean1g00241 411 PANTHER BTB-POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 29 379 IPR045005 GO:0016567(InterPro)
Hean1g00241 411 SUPERFAMILY POZ domain 185 315 IPR011333 -
Hean1g00241 411 Pfam BTB-POZ domain 198 315 IPR000210 GO:0005515(InterPro)
Hean1g00241 411 SMART BTB-4 208 317 IPR000210 GO:0005515(InterPro)
Hean1g00241 411 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 177 IPR008974 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00241 K10523 speckle-type POZ protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
102345 Hean15g00318 Hean1g00241
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:4942164 Hean1g00241 Hean-Chr1:6296638 dispersed
Hean Hean-Chr15:4948114 Hean1g00241 Hean-Chr1:6296638 dispersed
Hean Hean-Chr1:6296638 Hean3g03966 Hean-Chr3:170679441 transposed