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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00246 ATGGTATCTGCCATAGCCATTGGGATACAATTTGACTGGGCACTCCAGCTGTCACTGCTTACTCCGTATGTGCAATTAATTGGTGTACCCCACCAATGGGCGTCCTTCATTTGGATCTTCGATCCTTTATCCGGCTTAGTTGTCCAACCTATTGTTGGATACTATAACGACCGATGCACCTCCCGCTTCAGCCGCCGCCGTCCCTTCATCGCCGGCGGAGCGTTCCTGGTCGCCATCGTTGTATTCTTAATCGGATACGCGGCTGACATTGGCGTCTCTACTGGTGATAAAATTGGTGCACCAAGGAAGCCGCGTGCCATTGCAGTCTTCGTGTTTGGGTTCTAG 345 51.59 MVSAIAIGIQFDWALQLSLLTPYVQLIGVPHQWASFIWIFDPLSGLVVQPIVGYYNDRCTSRFSRRRPFIAGGAFLVAIVVFLIGYAADIGVSTGDKIGAPRKPRAIAVFVFGF 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00246 114 Pfam MFS-sugar transport protein 11 90 - -
Hean1g00246 114 PANTHER SUGAR TRANSPORTER 1 114 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Hean1g00246 114 SUPERFAMILY MFS general substrate transporter 5 87 IPR036259 -
Hean1g00246 114 Gene3D MFS general substrate transporter like domains 1 114 IPR036259 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00246 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:6369530 Hean1g00250 Hean-Chr1:6374068 dispersed
Hean Hean-Chr1:6369530 Hean1g00248 Hean-Chr1:6371807 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g01559 . 3 594 Sucrose Transporter gene family AT2G02860 67.763 0.0 828.0
Hean11g00512 . 420 501 Sucrose Transporter gene family AT1G22710 68.293 2.85e-32 115.0
Hean11g00513 . 28 418 Sucrose Transporter gene family AT1G66570 60.199 0.0 516.0
Hean9g02567 . 16 508 Sucrose Transporter gene family AT1G71890 63.911 0.0 629.0
Hean9g02574 . 16 508 Sucrose Transporter gene family AT1G71890 62.702 0.0 620.0
Hean8g03410 . 307 512 Sucrose Transporter gene family AT1G71890 37.379 1.43e-33 122.0
Hean8g03411 . 304 392 Sucrose Transporter gene family AT1G22710 46.739 4.78e-16 72.8
Hean8g03412 . 368 512 Sucrose Transporter gene family AT1G71890 36.301 1.81e-16 72.4
Hean8g03413 . 282 512 Sucrose Transporter gene family AT1G71890 38.362 6.39e-39 137.0
Hean5g01419 . 3 594 Sucrose Transporter gene family AT2G02860 65.512 0.0 776.0
Hean4g00198 . 60 594 Sucrose Transporter gene family AT2G02860 72.477 0.0 801.0
Hean4g01633 WGDA 16 510 Sucrose Transporter gene family AT1G22710 66.335 0.0 671.0
Hean2g01546 WGDA 14 501 Sucrose Transporter gene family AT1G22710 63.158 0.0 616.0
Hean2g01843 . 18 505 Sucrose Transporter gene family AT1G09960 67.623 0.0 651.0
Hean1g00244 . 49 444 Sucrose Transporter gene family AT1G22710 57.323 9.67e-159 457.0
Hean1g00245 . 157 444 Sucrose Transporter gene family AT1G22710 54.861 1.48e-104 313.0
Hean1g00246 . 35 147 Sucrose Transporter gene family AT1G22710 69.912 1.16e-52 171.0
Hean1g00247 . 157 501 Sucrose Transporter gene family AT1G22710 47.449 2.16e-110 331.0
Hean1g00248 . 35 147 Sucrose Transporter gene family AT1G22710 69.027 1.92e-50 164.0
Hean1g00249 . 157 501 Sucrose Transporter gene family AT1G22710 49.593 2.31e-112 335.0
Hean1g00250 . 35 147 Sucrose Transporter gene family AT1G22710 70.796 1.92e-52 170.0
Hean1g00251 . 367 444 Sucrose Transporter gene family AT1G22710 51.282 2.18e-15 68.6
Hean1g00252 . 157 298 Sucrose Transporter gene family AT1G22710 49.296 1.88e-46 155.0
Hean1g00253 . 35 147 Sucrose Transporter gene family AT1G22710 75.221 3.37e-57 182.0