AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00262 ATGGCACCCAGGAAAGCTGTGAATGCTCGCAATGATGATCAACCTCCTCCTCCCCCACTACCAAAAACTGCTGAAGAGCTGAACGCTCTACTGGAAGAGAGAATCTCTGCTGCTATCGCCCAGTACGAGGCGAACCGTACCCAAGACAGTGGAGGGCCAAGCAGTGCCAGGCGTAACGGACATGGAGATTCGTCCGGTGGAAACGCAGTTCAAGGCTGCACCTTCAAGCAGTTCCTCGACTGCAAACCTATGAACTACGATGGCACTGGAGGAGCAGTAGCCTTTGTGCGTTGGACGGAAAAGACTGAAGCCACAATCCGCATGAGCAAGTGTACCGCAGATCAGCAAGTCACTTTTGCTACTGGGCTGTTCGTCGACGAAGCACTGACATGGTGGAATTTGCAAGTTCAAACGCTGGGCGATGAGGCTGCATACGGCATGACTTGGGATGAATTGAAGGAGAAGATGAGAGAGAAGTATTGCTCTCGTGCCGAACTCCAAAGGTTGGAGACAGAGTTCTGGCACTTGACTATGGTAGGAGCTGACATCACTGGGTATACTCGGAGGTTCCATGATTTGTCTAGGGTGATTCCTTACATGGTGACTCCCGAATTCAAGCGCGTTGAACGCTACATTTGGGGATTGGCCCCAGAATTTCGTGGCATGGTGACGTCGGCCAAACCACAAACAATCACTGAGGCTGTAACTCTGGCTGTCAGTCTTACTGAGGATTGTGTTCGTATGGAGAAGTTATCGTTGAACCCAACAGAGAAGACCGAGACACATGTTGAGTCGTCCGGTGACAAGAAGAGAAAGCATTCGACCCTGAATCAAGTAACTCGCAACAACAAGGGTTCCAACAAGAAACGTGACACCAACCCCTCTAAGGAGTCAAAGACTTCGGCCAAAGGATACCAAGGCACCATGCCTAAGTGCCAAAAATGCAAGTATCATCATGATGGAGCTTGTCGCATTCCAAGGTGCGACAAGTGTGGTAGATTGGGTCATCGAACAGAAGACTGTTGGAGTAAGGGAAAGAATCAAAATGGAAACGGTGCTGGTAACAGGAATGATAACGGGAAAGGGCGAAACCAAGGATGCTTCAAGTGTGGAAGCAACGATCATTTCATGAGAGACTGCCCAAAGAAAGACAATGCTCAGGCTCGAGCATTTGTGATTGGAGCAAGGGACGCACGCGAGGACCCTAACGTGGTCACCGGTACGTTTCTAGTTAACAATCACTATGCATCCATATTATTTGACACTGGTGCCGACTATAGTTTCATGTCTGTGGAATTTAAACGTACGCTCGGAATAGAATCTAGTAGATTAGAAGTCCCATATTCCATAGAATTAGCCAATGGAAAACTTGTTGAATCGGGCGAAGTAGTTAGAGGGTGCACGCTAGAACTTGGTGAACGAAGCTTTAGCATCGACCTCTTACCTATTCAATTGGGTAGCTTCGATGTGGTAGTCGGAATGGACTGGCTGTCCAAGAACAAAGCTGAAGTTATTTGTCATGAGAAGATCATTCGCATCCCTTTGGCGAATGATGAAACTCTCATCGTGCATGGAGAAAAACGAGACGCGCCTCTTCGAATCATCAGTTGCATGAAGGCACAGAAGTGCTTAAGGAAAGGATGTGTTGCCTTCCTAGCACACGTTATAGATAAGAAGGCTGAGGAACCGAAACTCGAAGATATTCCTGTGGTGAAGGAATTTCCTGATGTGTTCCCTGAGGATCTGCCAGGACTACCTCCGCAACGACAAGTCGAATTCCGTATAGACTTGGTTCCGGGAGCTGCTCCTGTAGCCAAGGCACCGTATAGACTTGCGCCATCCGAAATGCAAGAACTATCTACACAACTCCAGGAGTTGTTGGATAAAGGATTCATAAGGCCAAGCTTCTCGCCATGGGGAGCTCCAGTTTTGTTCGTGAAGAAAAAGGATGGAACCATGCGGATGTGTATCGATTATAGGGAACTGAACAAACTAACGATCAAGAATCGGTACCCACTACCGAGGATTGACGACTTGTTTGACCAGTTACAAGGGTCAAGCTATTATTCCAAGATCGACCTTCGGTCTGGATACCACCAGCTGAGAATCCAAGAGGAGAGCGTACCAAAGACTGCATTCAGAACACGCTATGGGCATTACGAGTTTCTTGTGATGCCATTCGGGCTGACGAATGCACCAGCGGTCTTTATGGATCTGATGAACCCACGAGCAACACCTCAGAACCATCTTGGAGCTACTGAAAAAGGAGAAACTTTATGCAAAGTTCTCAAAATGCGAATTCTGGATTCGCGAAGTACAATTTCTTGGTCACGTTGTGAATGA 2343 47.8 MAPRKAVNARNDDQPPPPPLPKTAEELNALLEERISAAIAQYEANRTQDSGGPSSARRNGHGDSSGGNAVQGCTFKQFLDCKPMNYDGTGGAVAFVRWTEKTEATIRMSKCTADQQVTFATGLFVDEALTWWNLQVQTLGDEAAYGMTWDELKEKMREKYCSRAELQRLETEFWHLTMVGADITGYTRRFHDLSRVIPYMVTPEFKRVERYIWGLAPEFRGMVTSAKPQTITEAVTLAVSLTEDCVRMEKLSLNPTEKTETHVESSGDKKRKHSTLNQVTRNNKGSNKKRDTNPSKESKTSAKGYQGTMPKCQKCKYHHDGACRIPRCDKCGRLGHRTEDCWSKGKNQNGNGAGNRNDNGKGRNQGCFKCGSNDHFMRDCPKKDNAQARAFVIGARDAREDPNVVTGTFLVNNHYASILFDTGADYSFMSVEFKRTLGIESSRLEVPYSIELANGKLVESGEVVRGCTLELGERSFSIDLLPIQLGSFDVVVGMDWLSKNKAEVICHEKIIRIPLANDETLIVHGEKRDAPLRIISCMKAQKCLRKGCVAFLAHVIDKKAEEPKLEDIPVVKEFPDVFPEDLPGLPPQRQVEFRIDLVPGAAPVAKAPYRLAPSEMQELSTQLQELLDKGFIRPSFSPWGAPVLFVKKKDGTMRMCIDYRELNKLTIKNRYPLPRIDDLFDQLQGSSYYSKIDLRSGYHQLRIQEESVPKTAFRTRYGHYEFLVMPFGLTNAPAVFMDLMNPRATPQNHLGATEKGETLCKVLKMRILDSRSTISWSRCE 780
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00262 780 MobiDBLite consensus disorder prediction 252 305 - -
Hean1g00262 780 Gene3D - 324 389 - -
Hean1g00262 780 ProSiteProfiles Zinc finger CCHC-type profile. 367 382 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00262 780 SMART c2hcfinal6 366 382 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00262 780 SMART c2hcfinal6 327 343 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00262 780 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 591 731 - -
Hean1g00262 780 SUPERFAMILY Retrovirus zinc finger-like domains 348 389 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00262 780 MobiDBLite consensus disorder prediction 252 275 - -
Hean1g00262 780 CDD retropepsin-like 408 497 - -
Hean1g00262 780 CDD RT-LTR 630 741 - -
Hean1g00262 780 PANTHER LDOC1 RELATED 106 729 IPR032567 -
Hean1g00262 780 Pfam Retrotransposon gag protein 119 216 IPR005162 -
Hean1g00262 780 SUPERFAMILY Acid proteases 404 503 IPR021109 -
Hean1g00262 780 Pfam Zinc knuckle 366 382 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00262 780 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 646 743 IPR000477 -
Hean1g00262 780 ProSiteProfiles Zinc finger CCHC-type profile. 327 341 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00262 780 Gene3D - 671 741 IPR043128 -
Hean1g00262 780 MobiDBLite consensus disorder prediction 1 23 - -
Hean1g00262 780 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 699 731 - -
Hean1g00262 780 MobiDBLite consensus disorder prediction 41 68 - -
Hean1g00262 780 Pfam Retroviral aspartyl protease 387 513 - -
Hean1g00262 780 Coils Coil 152 172 - -
Hean1g00262 780 Gene3D Acid Proteases 390 523 IPR021109 -
Hean1g00262 780 SUPERFAMILY DNA-RNA polymerases 570 743 IPR043502 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00262 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr12:95527347 Hean1g00262 Hean-Chr1:6869462 dispersed
Hean Hean-Chr14:95507726 Hean1g00262 Hean-Chr1:6869462 dispersed
Hean Hean-Chr17:137195376 Hean1g00262 Hean-Chr1:6869462 dispersed
Hean Hean-Chr1:6869462 Hean7g00869 Hean-Chr7:66773909 dispersed
Hean Hean-Chr1:6869462 Hean4g00030 Hean-Chr4:753727 transposed