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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00267 ATGCGTTCTTTTGAAAATGATGGTGGATCAGCTGTTCAAGTGTATGCTAAAGAATCCAGTATACTAGTGCTGGATTTAATAAAAAACGGGCATAAACCCAAAGAAGACAGAGACATCGTACCTAAAATGATCACATTGGATCATGTTTTCGATATTTGTGGAGGTCGTCATGCGTTTATCGAAGCGGAAGAAGCTAAAGAGTTGCTAAAACCGCTAAAAGAGCCAGGAAACAAGTTTACAAAAAGTTGTTTTAGTAATAGAAGTTTCGGGTTACCTGCAGCGCATGTTGCTGCATCGGTTTTGTCGGGTGTTAAAGATCAGTTAACCGAAGTTGATTTATCGGACATTGTTTCTAGGAGGCTCGAGCCCGAAACCGTTGAAGTTTTGAGGATGTTTTCATTGGCTCTTGAAGGTTCAAAGTTGAGTTATTTGATTTTGTCAAGTGGGTATCCCGAGAGTGCTCGGGATTGA 471 40.55 MRSFENDGGSAVQVYAKESSILVLDLIKNGHKPKEDRDIVPKMITLDHVFDICGGRHAFIEAEEAKELLKPLKEPGNKFTKSCFSNRSFGLPAAHVAASVLSGVKDQLTEVDLSDIVSRRLEPETVEVLRMFSLALEGSKLSYLILSSGYPESARD 156
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00267 156 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 6 148 IPR045203 GO:0005096(InterPro)
Hean1g00267 156 Pfam WPP domain 3 36 IPR025265 -
Hean1g00267 156 Gene3D Ribonuclease Inhibitor 55 150 IPR032675 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00267 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
402266 Hean11g02521 Hean1g00267
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:7068814 Hean1g03771 Hean-Chr1:147259122 dispersed
Hean Hean-Chr1:7068814 Hean11g02521 Hean-Chr11:111783582 wgd
Hean Hean-Chr1:7068814 Hean4g03365 Hean-Chr4:178547256 wgd