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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00268 ATGGATGCTTCAAGAACCTCTTCTATGTGCTTCGGTATGGAATCTTTAGGGCTTGAAAGCGACATCGCAGGCGCAAAAACGTATTGTAATCTAGGACTCAAACAAACATCTAAGCAAAACCGAGGAAGCCCAAAAGTTTTATCACTTCTTTCTTCAATTCTCGAGAGGTGTGTCCAAATGAATGAGTCATTACTCGATAAGACACAGACTAAAGATGTTATTACGGTTTTTCATGGTTCAAGAGCACCGGCACTTAGCATTAAAGAGTATGTTGATAGAATTTTCAAGTATTCGCATTGCAGCCCCTCGTGTTTTGTTGTCGCACACGTTTACATGGATCGGTTTATTCAGTGTGGAAATGTTAATTTGACTTCTCTTAGTGTTCATCGACTTCTCATCACTAGTATAATGCTTGCTGCCAAGTTCATTGACGACGCATTCTACAACAACGCGTATTATGCGAAAGTGGGAGGGGTAACAACAGCAGAACTAAACAGATTGGAGATGAAATTCCTATTTGGCCTGGACTTTCGACTCCACGTCAGCCTTCGGACGTTTGGCAGATACTGTTCCCAGTTGGAAAATCAAGGTTCATGTGAGCTGCAAATGGAAAGACCGCCACGGGTGATTCACGCCCCATGTGGACTCAAGGATACCTGGTCCAACAGTGAAGACGCGAGTACTTACACCACAACAAAGATTCATACCGTATAA 714 42.86 MDASRTSSMCFGMESLGLESDIAGAKTYCNLGLKQTSKQNRGSPKVLSLLSSILERCVQMNESLLDKTQTKDVITVFHGSRAPALSIKEYVDRIFKYSHCSPSCFVVAHVYMDRFIQCGNVNLTSLSVHRLLITSIMLAAKFIDDAFYNNAYYAKVGGVTTAELNRLEMKFLFGLDFRLHVSLRTFGRYCSQLENQGSCELQMERPPRVIHAPCGLKDTWSNSEDASTYTTTKIHTV 237
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00268 237 Gene3D - 35 228 - -
Hean1g00268 237 SUPERFAMILY Cyclin-like 93 180 IPR036915 -
Hean1g00268 237 PANTHER UNCHARACTERIZED 36 213 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
Hean1g00268 237 Pfam Cyclin 62 179 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00268 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
100653 Hean10g00514 Hean1g00268
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:166609196 Hean1g00268 Hean-Chr1:7075076 dispersed
Hean Hean-Chr1:7075076 Hean1g02349 Hean-Chr1:112614429 dispersed
Hean Hean-Chr15:51206363 Hean1g00268 Hean-Chr1:7075076 transposed
Hean Hean-Chr1:7075076 Hean10g00514 Hean-Chr10:19097272 wgd