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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00278 ATGGACGCGGTTTATGCGGAGGTAGAGATCACATCTTCACTTTCAGCTCCTAAACTTTTCAAAGTCTACACTGACTTTGACATCATTGCCCCTAAGATTAATCCCGAATCTTACAAAACCATCAACGTTATCAAAGGTGATGGTGGAGTTGGAAGCATCAAGAGCATGACATATAATGATGGAACAAGTTCAAAGCACACAGTCGACGACATTGACACAAGCAACTTTATACTTAGTTGGACGTTCTTTGAAGGTGACGCCTTGATGGGTATAATAAACACAACCACTTATCATATGAAGTTCATACCTTCACCTAATGGAGGATCTGTATTCAAACAAACATTTCTAATTAGGTATAAAGGTGATGCTAAGCAAATGGATGATGTTATTAAAATTATCAAAGAATCAATCACGAATACTTTCAAGAAGATGGAGTCTTATGCTATTGCCCATCCCGAAGTTTACTAA 468 37.61 MDAVYAEVEITSSLSAPKLFKVYTDFDIIAPKINPESYKTINVIKGDGGVGSIKSMTYNDGTSSKHTVDDIDTSNFILSWTFFEGDALMGIINTTTYHMKFIPSPNGGSVFKQTFLIRYKGDAKQMDDVIKIIKESITNTFKKMESYAIAHPEVY 155
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00278 155 PANTHER OS03G0300400 PROTEIN-RELATED 6 155 IPR050279 GO:0004864(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009738(PANTHER)|GO:0010427(PANTHER)|GO:0038023(PANTHER)
Hean1g00278 155 CDD Bet-v1-like 7 147 - -
Hean1g00278 155 SUPERFAMILY Bet v1-like 6 155 - -
Hean1g00278 155 Pfam Pathogenesis-related protein Bet v 1 family 7 148 IPR000916 GO:0006952(InterPro)
Hean1g00278 155 Gene3D - 3 155 IPR023393 -
Hean1g00278 155 FunFam Major pollen allergen Bet v 1-A 1 155 - -
Hean1g00278 155 PRINTS Major pollen allergen Bet V1 signature 106 122 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Hean1g00278 155 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Hean1g00278 155 PRINTS Major pollen allergen Bet V1 signature 62 81 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Hean1g00278 155 PRINTS Major pollen allergen Bet V1 signature 140 150 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Hean1g00278 155 PRINTS Major pollen allergen Bet V1 signature 81 94 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00278 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:7256620 Hean3g03291 Hean-Chr3:155660058 dispersed
Hean Hean-Chr1:7256620 Hean3g03957 Hean-Chr3:170540157 transposed