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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00281 ATGCAGTTTTGGTTCAAAGCTTCGGGTTTCGGTTCGGTCAACAACAATCAACTGGTGGTTTGGTTCAGATTACGGTTTGGATCAGTTTCGGGTGATTCGGGTTCGCGACACGGTCAAAGTCAGTCAACGAAAGCCAACTGGTCAACCCCAGTCAACTTTTGGGTCAAACTTAGTCGACGAAAGACCCGTAGGAAGAATGCTTCTTCTGGAATGGGTGTTGCTGATCACTGTAAAGGCACCTTCTTGGAACTACAAAGAAAGAAGGCACACCGTTACGTGATTTTCGAAATTGACAAAAAGAAAACTCAAGTTGTTGTGGAGAAGACTGGCAATCCTGCTGAAAGTTACGATGATTTTACATCGGCTTTGCCCGAAAATGATTGCAGATACGCAATCTTTGACTTTGTAACCTCTGAGAACTGTCAAAAGAGCAAGATTTTCTTCATCGCATGGTTAGTTTTCTCTTTTTCCTATATGATCCATTTGCATACCTTAAGAAAAAAATTCTATGTAGTTAATGCCGCAGATATATAG 534 41.57 MQFWFKASGFGSVNNNQLVVWFRLRFGSVSGDSGSRHGQSQSTKANWSTPVNFWVKLSRRKTRRKNASSGMGVADHCKGTFLELQRKKAHRYVIFEIDKKKTQVVVEKTGNPAESYDDFTSALPENDCRYAIFDFVTSENCQKSKIFFIAWLVFSFSYMIHLHTLRKKFYVVNAADI 177
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00281 177 Pfam Cofilin-tropomyosin-type actin-binding protein 77 151 IPR002108 GO:0003779(InterPro)
Hean1g00281 177 ProSiteProfiles ADF-H domain profile. 70 177 IPR002108 GO:0003779(InterPro)
Hean1g00281 177 PANTHER COFILIN-RELATED 66 152 IPR017904 GO:0005737(PANTHER)|GO:0015629(PANTHER)|GO:0015629(InterPro)|GO:0030042(PANTHER)|GO:0030042(InterPro)|GO:0051015(PANTHER)
Hean1g00281 177 SMART adf-2 75 176 IPR002108 GO:0003779(InterPro)
Hean1g00281 177 CDD ADF-cofilin-like 69 151 IPR017904 GO:0015629(InterPro)|GO:0030042(InterPro)
Hean1g00281 177 Gene3D Severin 66 160 IPR029006 -
Hean1g00281 177 SUPERFAMILY Actin depolymerizing proteins 66 152 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00281 K05765 cofilin
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr13:170471851 Hean1g00281 Hean-Chr1:7287948 dispersed
Hean Hean-Chr15:87912037 Hean1g00281 Hean-Chr1:7287948 dispersed
Hean Hean-Chr1:7287948 Hean5g00431 Hean-Chr5:12364620 dispersed
Hean Hean-Chr1:7287948 Hean10g00373 Hean-Chr10:12280483 transposed