AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00287 ATGATTGACAAAACAGACTCAAAAGGAAAGATATTGCCTGAGATGATTTTAATCTGCCAAAATCTAGTAAACAATCTCCAACATCCAAATGAGTACATTCGTGGTGTTACTATAAGGTTTCTTTGTCGTCTCAACGAGACAGAGATTATTGTGCCCTTAATCCCATCTATACTGGCTAATCTTGAACACCGCCATCCGTACATAAGAAGGAATGCAATCCTTGCTGTAATGGCAATCTACAAGCTTCCACAGGGTGAACAGCTTCTAGTTGATGCTCCAGAGATGATTGAGAAAGTTCTCTCAACAGAAGCAGATCAATCAGCCAAAAGAAATGCTTTTCTCATGCTTTTCACATGTGCACAGGATCGTGCTGTTAATTACCTTTTGACCCATGTTGACCGAGTGTCTGAATGGGGAGAATTGCTTCAAATGGTTGTGTTGGAGTTGATTCGTAAAGTGTGTAGAGCAAACAAAGGAGAAAAAGGCAAGTATATCAAGATTATCATATCTCTATTAAGCGTTCCTTCTGCTGCTGTTATTTATGAATGTGCTGGCACACTCGTGTCTTTATCATTTGCTCCTACTGCAATTAAGGCTGCAGCCAATACCTACTGCCAGCTACTACTCTCTCAAAGTGACAACAATGTCAAACTTATTGGGGAAGAATTATGGGTTTGGGACTATTTAATTTGA 693 39.68 MIDKTDSKGKILPEMILICQNLVNNLQHPNEYIRGVTIRFLCRLNETEIIVPLIPSILANLEHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEADQSAKRNAFLMLFTCAQDRAVNYLLTHVDRVSEWGELLQMVVLELIRKVCRANKGEKGKYIKIIISLLSVPSAAVIYECAGTLVSLSFAPTAIKAAANTYCQLLLSQSDNNVKLIGEELWVWDYLI 230
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00287 230 Gene3D - 5 221 IPR011989 -
Hean1g00287 230 PANTHER COATOMER SUBUNIT BETA 1 219 IPR016460 GO:0005737(InterPro)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0006891(PANTHER)|GO:0030126(PANTHER)
Hean1g00287 230 Pfam Adaptin N terminal region 14 219 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Hean1g00287 230 SUPERFAMILY ARM repeat 14 218 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00287 K17301 coatomer subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:7340799 Hean4g00002 Hean-Chr4:228372 dispersed
Hean Hean-Chr1:7340799 Hean14g02301 Hean-Chr14:124513018 transposed