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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00302 ATGGGATGGAAAGCAGCTCAAAAGCTCATACATCACTGGAAGATTTTGCGAGGAGATAATGTGATGATAATTAGGGGAAAAGATAGGGGTGAAACTGGCACTATAAAACGTGTGATTCGCTCTCAGAATCGTGTTATTGTTGAGGGAAAAAATCTGGTAAAGAAACATATAAAGCAAGGGCAAGGCCATGAAGGTGGGATATTTACCGTAGAAGCCCCTCTTCATGTCTCAAATGTTCAAATCGTTGATCCAGTTACAGGGCAGCCTTGTAAGGTTGGAATAAGGTATCAAGAAGACGGTACTAAAGTAAGAGTTGCAAGAGGGATAGGAGCATCTGGGTCGATTATTCCTCGTCCTGAGATTTTGAAAATTAGGGCTACTCCACGCCCAACAATCGGGCCGAAGGATACTCCTATAGAGCTGGTGCACGAGAAGACGTATGATGCTAAAACTGGTAAGGGCATGCCAGGTCTTTAG 477 43.82 MGWKAAQKLIHHWKILRGDNVMIIRGKDRGETGTIKRVIRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQIVDPVTGQPCKVGIRYQEDGTKVRVARGIGASGSIIPRPEILKIRATPRPTIGPKDTPIELVHEKTYDAKTGKGMPGL 158
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00302 158 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 6 156 IPR003256 GO:0003735(InterPro)|GO:0005739(PANTHER)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0006412(PANTHER)
Hean1g00302 158 Pfam Ribosomal proteins 50S L24-mitochondrial 39S L24 51 108 IPR003256 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00302 158 Hamap Large ribosomal subunit protein uL24 [rplX]. 13 107 IPR003256 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00302 158 Gene3D - 4 111 IPR014722 -
Hean1g00302 158 SMART kow-9 14 41 IPR005824 -
Hean1g00302 158 ProSitePatterns Ribosomal protein L24 signature. 18 35 IPR005825 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00302 158 Pfam KOW motif 17 48 IPR005824 -
Hean1g00302 158 CDD KOW-RPL26 18 81 IPR041988 GO:0003723(InterPro)
Hean1g00302 158 SUPERFAMILY Translation proteins SH3-like domain 10 108 IPR008991 -
Hean1g00302 158 NCBIfam 50S ribosomal protein L24 14 108 IPR003256 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00302 K02895 large subunit ribosomal protein L24
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:8008262 Hean1g01258 Hean-Chr1:67190727 dispersed