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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00317 ATGTCAACGGAGGAGCCACCGTCCTCCACCACCGCCACGTCAGCACTCGACAAACCTCTCCACCTCCTCACCGAAGACGACATTTCTCAACTCACGCGCGAAGACTGCCGCCGCTTCCTCAAACAAAAAGGGATGAGACGACCTTCGTGGAACAAATCACAGGCGATCCAGCAAGTAATCATGCTGAAAGCACTGCTGGAACCGTCGCCGGACACCGATGACGGTGGCCGGAAACCGTACATTACTTCACGCCAGCAACAAACCCTAGCCACTCGTGACCAAAAAGGAACAAGTGCAGATACGGAGATCTCGCTTTCAGCGGAAGAATCAGTAGCTGGTCACCGTAGTAATGATACGGAGAAGGGGGATGTTTTGGGGGATAATGATTCCGCTGCTCCTACTGGGATTGTTGGTGGGATAGAAGAGAAAAAAGGGCAAATGACAATATTTTATAGCGGCAAGGTGAATGTCTATGATGATGTCCCAGCTGATAAGGCACAGGCACTCTTCCAGCTTGCTGCAAGCCCACTTCAGTTTTCTCAAGAAGACCCACTTGATGGAAAGACGTTACAATCTCCAAGCATCAATGCGGGCCGCGATTTCCCTTCTGTACTCTCGCCAGTCTTGCAGACAGTGAGAATGACGGATAACTATCGACTGCACAAAGAAGAAAACCATATATCGCGTGAAGATAACTCTGGTGAAGGTTCAGCAAGCAGAAAAGCGTCAGTTCAAAGATACCTAGAGAAAAAGAAAGACAGGTTTAAGAGCAAGAGGAAAGCAGGAGCTACCTTAGATGTTTACGCTAACCATCAGATCGGGAACCATAATAACCCGCATGAGCCGTTTAGTAGGAGTGCCACTTGCTCCCCACCGCCAGTCAGACCGCCTAACACCCCTAACCGCTTTAACTAA 915 49.62 MSTEEPPSSTTATSALDKPLHLLTEDDISQLTREDCRRFLKQKGMRRPSWNKSQAIQQVIMLKALLEPSPDTDDGGRKPYITSRQQQTLATRDQKGTSADTEISLSAEESVAGHRSNDTEKGDVLGDNDSAAPTGIVGGIEEKKGQMTIFYSGKVNVYDDVPADKAQALFQLAASPLQFSQEDPLDGKTLQSPSINAGRDFPSVLSPVLQTVRMTDNYRLHKEENHISREDNSGEGSASRKASVQRYLEKKKDRFKSKRKAGATLDVYANHQIGNHNNPHEPFSRSATCSPPPVRPPNTPNRFN 304
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00317 304 MobiDBLite consensus disorder prediction 1 21 - -
Hean1g00317 304 MobiDBLite consensus disorder prediction 66 138 - -
Hean1g00317 304 MobiDBLite consensus disorder prediction 79 105 - -
Hean1g00317 304 MobiDBLite consensus disorder prediction 220 236 - -
Hean1g00317 304 MobiDBLite consensus disorder prediction 270 285 - -
Hean1g00317 304 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 268 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Hean1g00317 304 MobiDBLite consensus disorder prediction 181 202 - -
Hean1g00317 304 SMART tify-2 140 175 IPR010399 -
Hean1g00317 304 ProSiteProfiles Tify domain profile. 140 175 IPR010399 -
Hean1g00317 304 MobiDBLite consensus disorder prediction 1 17 - -
Hean1g00317 304 MobiDBLite consensus disorder prediction 289 304 - -
Hean1g00317 304 Pfam tify domain 142 174 IPR010399 -
Hean1g00317 304 MobiDBLite consensus disorder prediction 181 199 - -
Hean1g00317 304 MobiDBLite consensus disorder prediction 220 304 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00317 K13464 jasmonate ZIM domain-containing protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
402261 Hean11g02498 Hean1g00317
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:8525738 Hean8g00443 Hean-Chr8:7798762 dispersed
Hean Hean-Chr1:8525738 Hean11g02498 Hean-Chr11:108799019 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g00886 WGDA 6 192 Tify gene family AT5G13220 34.225 9.45e-23 88.2
Hean16g02411 . 18 268 Tify gene family AT3G21175 56.107 8.99e-85 256.0
Hean15g02097 WGDA 3 128 Tify gene family AT1G30135 43.066 5.35e-25 90.5
Hean15g04410 . 7 214 Tify gene family AT1G72450 32.71 2.39e-22 89.7
Hean15g04443 . 26 267 Tify gene family AT1G51600 59.35 1.95e-90 267.0
Hean13g01859 WGDA 27 265 Tify gene family AT4G32570 42.414 2.97e-45 157.0
Hean12g00016 . 120 246 Tify gene family AT1G74950 35.659 2.49e-16 71.2
Hean12g00701 ACH,WGDA 22 228 Tify gene family AT1G19180 34.135 2.04e-18 79.0
Hean12g00702 . 19 228 Tify gene family AT1G19180 32.569 5.52e-18 78.2
Hean12g00704 . 121 228 Tify gene family AT1G19180 41.071 8.43e-16 73.6
Hean12g00705 . 15 228 Tify gene family AT1G19180 33.333 1.64e-20 85.5
Hean12g01115 WGDA 1 332 Tify gene family AT3G17860 34.808 4.57e-34 125.0
Hean12g02511 . 170 336 Tify gene family AT3G17860 43.114 7.02e-21 88.2
Hean12g03378 . 119 244 Tify gene family AT1G70700 35.714 5.35e-16 72.0
Hean11g02498 WGDA 5 273 Tify gene family AT4G14720 40.484 4.46e-49 163.0
Hean11g04221 . 20 228 Tify gene family AT1G19180 35.714 2.97e-21 86.3
Hean10g02186 . 18 268 Tify gene family AT3G21175 57.812 2.87e-87 263.0
Hean10g03402 ACH,WGDA 15 234 Tify gene family AT1G19180 33.613 3.55e-22 89.4
Hean9g04810 ACH 2 210 Tify gene family AT1G72450 35.023 6.08e-27 102.0
Hean8g00280 . 27 192 Tify gene family AT5G13220 35.928 7.22e-22 85.1
Hean8g00443 WGDA 1 332 Tify gene family AT3G17860 32.945 4.52e-27 106.0
Hean8g01560 . 50 165 Tify gene family AT5G20900 36.134 3.99e-12 61.2
Hean8g02867 . 57 152 Tify gene family AT5G20900 34.343 1.49e-08 49.7
Hean6g01420 WGDA 4 192 Tify gene family AT5G13220 37.5 1.24e-25 95.1
Hean6g01918 WGDA 1 252 Tify gene family AT1G19180 33.462 1.35e-29 107.0
Hean6g01925 . 200 228 Tify gene family AT1G19180 65.517 1.61e-07 46.6
Hean4g00060 ACH 13 226 Tify gene family AT1G19180 31.416 1.16e-18 79.7
Hean4g02882 WGDA 3 130 Tify gene family AT1G30135 39.007 1.09e-19 77.0
Hean4g04273 WGDA 1 251 Tify gene family AT1G19180 35.521 2.07e-35 125.0
Hean2g02463 WGDA 27 265 Tify gene family AT4G32570 41.254 3.99e-44 154.0
Hean1g00317 WGDA 6 273 Tify gene family AT4G14720 41.197 1.66e-51 170.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean tify 1.3e-15 No_clan TF Tify