AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00319 ATGAGGACATTCTTTCCATCTGAATCTTGTAAAGAAACACATCTAAATGCTCTGAATCCACAATCATGGCTGCAAGTTGAAAGAGGAAAGCTTTCGAAAGTTTCGCCGCACTCGCCTTCTTCGCTAGAAACGCTAATCAAAGTGCCCGATCCGCCGATTCTTCCATTCTTTAAGCCTGTTGATTACGTAGAAGTTTTAGCTCAAATCCACAAAGAACTTGAATCATGCCCTCCACATGAACGCACAAACCTCTATTTATTACAATTTCAAGTCTTTAAAGGCCTCGGTGACATTAAGTTAATGAGAAGAAGCCTTAGATTAGCTTGGCTCAAAGCAAGTACGGTTCATGAACGGCTCGTTTTTGGGGCATGGTTAAAATATGAAAAACGAGGTGAAGAACTTATATCGGATTTACTCTCTTCGTGTGGTAAATGTTCTAAAGAGTTTGGGTTAATAGATATTGGTTGCGAGTTCCCTTCGGTTGTAAACTCTAGTTTAGTTGATGGCGCAGTCGTTGATCAAAAGAATAATATATCGGGAACGGTTTCGTTTAAAATCGGGGATGATAAAATAACATGCGATAGACAAAAAATGGCGACCCTTTCACCCCCTTTTCGTTCTATGCTTAACGGGTGTTTTCTTGAATCGGTATCCGAAGACATAGATTTGTCGAAAAACGATATTTCATCTGCGGGTATGAAGGTGATAAGTGAATTTAGCTCAACCGGTATTTTACCCGATTTACCAACCGATCTTTTACTAGAAATCATGGTGTTTTCGAGTAAATTTTGTTGCGAGAATCTTAAAGATTCTTGTGATCGGAAACTTGCAAAATTTGTTTCATCAAGAAACGATGCGGTTGAACTTATGGAATACGCTCTCGAAGAGAATTGCCCGGTTCTTGCTGCCTCGTGTTTGCAGATTTTCCTTCAAGAACTCCCGGATTCTCTTAACGATGAGCGGGTTGTTGACTTGTTGACCAGTGTTAACAGTTTGCATAGATCTATTATGGTGGGGTCCGCTTCGTTTTCACTCTACTGTCTTTTAAGCCAGGTCGCGATGGATCTTGATTCGGGATCCGATAAGTCCGCTCGTTTCTTGGAACAATTAGTGGATTCTACGGAAAATAGTCGACAAAAGATGGTGGCATATCATATGTTAGGATGTGTGAAATTAGCCAAGAAAGAATATGACGAAGCCGAACGAGTCTTCGAGGTTGCGTTGAGTGAAGGACACGTTTATTCCGTCATAGGTTTGACCAGAATCGGTCAAATTAAGGGCGGAAAGCTTGAATCTTATAACAAACTTAGCTCAGTTATTTCGAATTACACCCCACTCGGGTGGATGTATCAAGAACGATCTTTATACTGCGAAAATAACGAAAAAAGATGGGAAGATCTCGAAAAAGCAACCGAATTGGATCCGACGTTAACGTACCCGTATATGTACCGTGCGGCTTCGTTAATGAAGAAACAAAACGTTCAAGATTCACTGGCGGAAATCAACAAGATTCTCGGTTTTAAACTTGCGGTTGAATGTTTGGAATTGAGGTTTTGTTTTTATCTAGTTCTCGAAGATTATCAATCGGCGATTTGCGATGTTCAGGCTATTCTTACGATTTCTCCTGATTATCGGATGTTTGAAGGGCGGGTACCCGCAACGCAATTTCAAACGTTAGTTCGTGAGCATGTTCCAAATTGGACGACCGCAGATTACTGGTTACAGTTGTATGATCGGTGGTCCGCTGTTGATGATATCGGGTCACTTTCGGTAATTTATCAAATGCTCGATTCTGAAACGGCTAAAGGCGTTTTATATTTTAGACAGTCTTTGCTTCTCCTCAGGTTAAATTGTCCGGAAGCAGCGATGCGGAGTTTACAACTGGCCCGTCAACATGCGTCAAGCGAACATGAACGTTTAGTTTACGAGGGTTGGATATTATACGATACGGGCCATTGCGATGAAGGGTTAAAGAAAGCCGAAGAATCTATTAGTTTGAATAGATCTTTTGAGGCCTTTTTTCTAAAAGCTTACGCTTTAGCGGATTCTAGTCAAGATCCGACCTGTTCTTCAACGGTTGTCGCACTTCTTCAAGATGCCCTTAAATGCCCTTCTGACAGGCTTCGCAAAGGCCAGGCGTTGAACAATCTTGGAAGTGTTTACGTAGACTCAGGTAAACTAGACCTTGCAGCCGATTGCTACATTAACGCACTTAAAATACGACACACGAGGGCCCACCAGGGGCTTGCTCGTGTCCATTATTTAAAAAACGACAAGGCAGCTGCCTATGAAGAAATGACAAAATTGATTGAAAAGGCTCGGAACAATGCGTCCGCTTATGAGAAACGATCAGAGTATTGTGAACGTGAACAGACGAAAATAGATCTTGAAATGGTCACTCGTTTAGATCCTCTTCGGGTTTACCCTTACAGATACCGTGCAGCAGTCTTGATGGACAACCACAAGGAGAAAGAAGCGATCGCCGAGCTTTCAAGAGCGATAGCGTTCAAAGCCGACTTGCATTTACTGCATTTGCGAGCAGCGTTTCATGAACATATCGGGGATGTATCGGGTGCCATGCGGGACTGTCGAGCCGCCCTCTCTTTCGACCCGAATCATCAAGAAATGCTTGAACTCCGAAGCCGTGTAAACAGCCAAGAACCTTAA 2667 42.52 MRTFFPSESCKETHLNALNPQSWLQVERGKLSKVSPHSPSSLETLIKVPDPPILPFFKPVDYVEVLAQIHKELESCPPHERTNLYLLQFQVFKGLGDIKLMRRSLRLAWLKASTVHERLVFGAWLKYEKRGEELISDLLSSCGKCSKEFGLIDIGCEFPSVVNSSLVDGAVVDQKNNISGTVSFKIGDDKITCDRQKMATLSPPFRSMLNGCFLESVSEDIDLSKNDISSAGMKVISEFSSTGILPDLPTDLLLEIMVFSSKFCCENLKDSCDRKLAKFVSSRNDAVELMEYALEENCPVLAASCLQIFLQELPDSLNDERVVDLLTSVNSLHRSIMVGSASFSLYCLLSQVAMDLDSGSDKSARFLEQLVDSTENSRQKMVAYHMLGCVKLAKKEYDEAERVFEVALSEGHVYSVIGLTRIGQIKGGKLESYNKLSSVISNYTPLGWMYQERSLYCENNEKRWEDLEKATELDPTLTYPYMYRAASLMKKQNVQDSLAEINKILGFKLAVECLELRFCFYLVLEDYQSAICDVQAILTISPDYRMFEGRVPATQFQTLVREHVPNWTTADYWLQLYDRWSAVDDIGSLSVIYQMLDSETAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCDEGLKKAEESISLNRSFEAFFLKAYALADSSQDPTCSSTVVALLQDALKCPSDRLRKGQALNNLGSVYVDSGKLDLAADCYINALKIRHTRAHQGLARVHYLKNDKAAAYEEMTKLIEKARNNASAYEKRSEYCEREQTKIDLEMVTRLDPLRVYPYRYRAAVLMDNHKEKEAIAELSRAIAFKADLHLLHLRAAFHEHIGDVSGAMRDCRAALSFDPNHQEMLELRSRVNSQEP 888
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00319 888 PANTHER ETO1-RELATED 1 887 IPR044631 GO:0010105(InterPro)
Hean1g00319 888 SMART tpr-5 511 544 IPR019734 GO:0005515(InterPro)
Hean1g00319 888 SMART tpr-5 711 744 IPR019734 GO:0005515(InterPro)
Hean1g00319 888 SMART tpr-5 603 636 IPR019734 GO:0005515(InterPro)
Hean1g00319 888 SMART tpr-5 637 670 IPR019734 GO:0005515(InterPro)
Hean1g00319 888 SMART tpr-5 381 414 IPR019734 GO:0005515(InterPro)
Hean1g00319 888 SMART tpr-5 840 873 IPR019734 GO:0005515(InterPro)
Hean1g00319 888 Pfam Tetratricopeptide repeat 712 740 IPR019734 GO:0005515(InterPro)
Hean1g00319 888 SUPERFAMILY TPR-like 382 504 IPR011990 GO:0005515(InterPro)
Hean1g00319 888 Coils Coil 756 790 - -
Hean1g00319 888 Gene3D Tetratricopeptide repeat domain 794 887 IPR011990 GO:0005515(InterPro)
Hean1g00319 888 Gene3D Potassium Channel Kv1.1; Chain A 175 319 IPR011333 -
Hean1g00319 888 Coils Coil 390 410 - -
Hean1g00319 888 Gene3D Tetratricopeptide repeat domain 599 793 IPR011990 GO:0005515(InterPro)
Hean1g00319 888 ProSiteProfiles TPR repeat profile. 711 744 IPR019734 GO:0005515(InterPro)
Hean1g00319 888 SUPERFAMILY TPR-like 465 670 IPR011990 GO:0005515(InterPro)
Hean1g00319 888 SUPERFAMILY TPR-like 695 881 IPR011990 GO:0005515(InterPro)
Hean1g00319 888 SUPERFAMILY POZ domain 182 278 IPR011333 -
Hean1g00319 888 Gene3D Tetratricopeptide repeat domain 345 548 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00319 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
402260 Hean11g02493 Hean1g00319
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:73688805 Hean1g00319 Hean-Chr1:8560239 transposed
Hean Hean-Chr2:164731758 Hean1g00319 Hean-Chr1:8560239 transposed
Hean Hean-Chr7:130251775 Hean1g00319 Hean-Chr1:8560239 transposed
Hean Hean-Chr1:8560239 Hean11g02493 Hean-Chr11:108539134 wgd