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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00321 ATGAACCCTTTTTACTCAGTTATTAAAGAAGAATATGATGGTGGTGGTGGTGGTGGTAAACAACCAGTGGTGGTGGTACAAGCTCCACAGCCAATGGAGGGGCTACATGATGCTGGGCCCCCACCTTTTTTGACAAAAATCTATGATATGGTGAATGACCAAACAATTGATCACATAATTTGTTGGAGCAGAGGAGGTCAAAGCTTTGTGGTGTTGGATCCACATGCTTTTTCTACTAATCTTCTTCCAAGATACTTTAAGCATAATAATTTCTCTAGCTTTGTCAGGCAGCTCAATACTTATGGATTTCGAAAGATCGATCCGGACACATGGGAATTCGCTAACGAAGCGTTTGTAAGAGGTAAACGACATGTGTTAAAGAACATCAAGAGAAGAAGAACGCCTAACGCTCAAGTGTTATCTCCGGTTAACGAAATTGGAAAGTCGAGTTTCGATGAAGTTGGTCATCTAAAACACGAAAAACAGGTGTTAATGATGGAGTTAGTTAAGCTTAAACAACAACAACAAACCACGCGGGCCCAACTTCAAGCAATGGAGCTACGGTTACAAGGAACCGAGTTAAAACAACAAAAGATGATGAATTTCTTGGCGAAAGCAATGCAAAATCCGGACTTTGTTCAGAAACTGGTCAAACATGGTAAAAGTAAGGAGTTTCAAGAAGCGATCAAGAACCAGATCGGCGAATCAAGTCAAACGGGTGGCGGGTCGAAGCTTATTAAATCCGAACCGGAGGAATTCATGGATAGTTCGTCGTTCCAAGTGTCGGAACTCGAGGCGCTTGCGTTAGAGATTCAAGGGATTGGTAGATCGAAAAGAAATCAAGAACGCGAACGCGAACACGAACACGAACGAAACGATCTCGAATTTGACGGTGGGGAGAAAGAACTGGATGATGAATTCTGGGAAGAGTTGTTTAGTGACAGATCATATGAACAGTCTGCTGATGATGTGAATTTCTTGGCTGATAAGTTGGATTTCTTGGGCTCGAGCCCGAAGTAG 1020 42.65 MNPFYSVIKEEYDGGGGGGKQPVVVVQAPQPMEGLHDAGPPPFLTKIYDMVNDQTIDHIICWSRGGQSFVVLDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDTWEFANEAFVRGKRHVLKNIKRRRTPNAQVLSPVNEIGKSSFDEVGHLKHEKQVLMMELVKLKQQQQTTRAQLQAMELRLQGTELKQQKMMNFLAKAMQNPDFVQKLVKHGKSKEFQEAIKNQIGESSQTGGGSKLIKSEPEEFMDSSSFQVSELEALALEIQGIGRSKRNQEREREHEHERNDLEFDGGEKELDDEFWEELFSDRSYEQSADDVNFLADKLDFLGSSPK 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00321 339 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 313 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Hean1g00321 339 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hean1g00321 339 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hean1g00321 339 FunFam Heat shock transcription factor 1 36 133 - -
Hean1g00321 339 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hean1g00321 339 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hean1g00321 339 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hean1g00321 339 SMART hsfneu3 39 132 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hean1g00321 339 MobiDBLite consensus disorder prediction 275 301 - -
Hean1g00321 339 Gene3D - 36 133 IPR036388 -
Hean1g00321 339 SUPERFAMILY Winged helix DNA-binding domain 39 132 IPR036390 -
Hean1g00321 339 Coils Coil 168 188 - -
Hean1g00321 339 MobiDBLite consensus disorder prediction 276 298 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00321 K09419 heat shock transcription factor, other eukaryote
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:8660795 Hean4g03322 Hean-Chr4:176295253 dispersed
Hean Hean-Chr1:8660795 Hean13g02707 Hean-Chr13:121470617 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g00591 . 6 295 Heat shock transcription factors Hsfs gene family AT1G32330 66.892 5.34e-133 391.0
Hean17g03997 . 3 395 Heat shock transcription factors Hsfs gene family AT4G18880 42.857 3.29e-92 280.0
Hean16g01078 . 1 347 Heat shock transcription factors Hsfs gene family AT1G46264 46.499 8.78e-90 270.0
Hean16g03010 . 5 343 Heat shock transcription factors Hsfs gene family AT5G45710 44.444 5.68e-85 260.0
Hean16g04062 . 1 343 Heat shock transcription factors Hsfs gene family AT5G45710 43.784 4.32e-90 273.0
Hean15g02208 . 1 342 Heat shock transcription factors Hsfs gene family AT5G45710 42.318 5.93e-87 264.0
Hean15g03681 . 9 205 Heat shock transcription factors Hsfs gene family AT4G36990 60.396 4.14e-75 227.0
Hean14g04297 . 1 267 Heat shock transcription factors Hsfs gene family AT5G62020 50.323 6.07e-89 267.0
Hean13g00895 . 1 267 Heat shock transcription factors Hsfs gene family AT5G62020 55.208 9.78e-98 288.0
Hean13g01095 . 1 290 Heat shock transcription factors Hsfs gene family AT1G32330 63.793 1.75e-122 362.0
Hean13g01635 . 11 377 Heat shock transcription factors Hsfs gene family AT5G03720 44.142 3.75e-85 261.0
Hean13g02707 . 31 343 Heat shock transcription factors Hsfs gene family AT2G26150 53.918 2.33e-110 324.0
Hean12g00068 . 43 245 Heat shock transcription factors Hsfs gene family AT2G26150 40.291 7.77e-48 162.0
Hean12g00153 . 14 203 Heat shock transcription factors Hsfs gene family AT3G24520 57.732 7.73e-79 239.0
Hean12g03200 . 7 252 Heat shock transcription factors Hsfs gene family AT4G36990 50.0 2.26e-69 214.0
Hean11g03415 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 49.351 6.05e-130 381.0
Hean11g04227 . 40 114 Heat shock transcription factors Hsfs gene family AT5G03720 84.0 3.67e-39 135.0
Hean10g01362 . 38 244 Heat shock transcription factors Hsfs gene family AT2G41690 54.808 8.28e-68 207.0
Hean10g03929 . 14 199 Heat shock transcription factors Hsfs gene family AT3G24520 59.204 4.68e-79 241.0
Hean10g04036 . 31 246 Heat shock transcription factors Hsfs gene family AT2G26150 45.701 5.78e-71 224.0
Hean9g03085 . 7 263 Heat shock transcription factors Hsfs gene family AT4G36990 54.307 1.43e-87 260.0
Hean9g03662 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 50.933 2.24e-108 319.0
Hean8g01787 . 17 299 Heat shock transcription factors Hsfs gene family AT1G67970 40.864 5.83e-66 210.0
Hean6g00190 . 1 265 Heat shock transcription factors Hsfs gene family AT5G62020 46.377 1.38e-74 227.0
Hean6g00916 . 43 306 Heat shock transcription factors Hsfs gene family AT2G26150 36.101 3.12e-51 172.0
Hean6g01057 . 7 477 Heat shock transcription factors Hsfs gene family AT1G32330 50.402 4.50e-142 414.0
Hean5g00202 . 27 188 Heat shock transcription factors Hsfs gene family AT3G51910 35.329 1.37e-26 102.0
Hean4g01159 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 53.6 2.37e-113 331.0
Hean4g02998 . 32 332 Heat shock transcription factors Hsfs gene family AT5G45710 39.13 1.33e-68 215.0
Hean4g03000 . 118 332 Heat shock transcription factors Hsfs gene family AT5G45710 28.448 3.97e-19 82.4
Hean4g03319 . 42 126 Heat shock transcription factors Hsfs gene family AT3G22830 65.882 6.68e-39 132.0
Hean4g03322 . 42 376 Heat shock transcription factors Hsfs gene family AT3G22830 51.642 1.44e-108 320.0
Hean3g00185 . 14 197 Heat shock transcription factors Hsfs gene family AT3G24520 61.929 5.40e-77 236.0
Hean3g02883 . 31 279 Heat shock transcription factors Hsfs gene family AT2G26150 61.355 2.40e-105 310.0
Hean3g02947 . 9 96 Heat shock transcription factors Hsfs gene family AT1G32330 69.318 3.91e-34 122.0
Hean2g00831 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 55.026 1.23e-113 332.0
Hean1g00321 . 1 402 Heat shock transcription factors Hsfs gene family AT3G22830 41.045 3.40e-93 281.0
Hean1g01510 . 16 151 Heat shock transcription factors Hsfs gene family AT3G24520 32.847 2.03e-21 93.6
Hean1g02768 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 52.876 5.53e-138 402.0
Hean1g03490 . 41 285 Heat shock transcription factors Hsfs gene family AT5G03720 51.822 1.05e-79 245.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean HSF_DNA-bind 6.8e-33 CL0123 TF HSF