AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00322 ATGATGTTTTCAGCATCAGTTTATTCTTCTAGCAATAAAACCTCTACTTCTTTATCTGATCAAGATGCTGCAACCAGCACTGTTTCCCCTGTGATTACAAGCAAGATTCATCATGATCAGTTCACTCCTTCAATCACACTTTCTTCAATTTCAAGTCATATTCAAGAACATGATCATCTCTACCCTAGTCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCAGGAAATCCAGATCCAGATGCAGAAGTGATAGCATTATCACCAAAAACACTGATGGCAACAAACAGATTTGTGTGTGAGATTTGCAACAAAGGGTTTCAGAGAGATCAAAACTTGCAACTTCACAGAAGAGGTCATAACCTACCATGGAAACTGAAGCAAAGAAACAACAAAGATGAGGTCAAGAAAAGAGCTTATGTGTGCCCTGAACCTACTTGTGTGCACCACCACCCTTCTAGGGCTCTTGGGGATCTCACTGGGATCAAGAAACACTTTTGTAGAAAACATGGTGAAAAGAAGTGGAAGTGTGACAAGTGTTCTAAGATCTATGCAGTTCAATCTGATTGGAAAGCACATTCTAAAACTTGTGGCACTAGGGAGTATAGATGTGACTGTGGTACCCTCTTCTCCAGGAAAGATAGCTTTATTACTCACAGAGCCTTCTGTGATGCTTTAGCTGAAGAAACTGCCAGACTCTCAGCTGCAGCTGCAGCTGCAGCTTCAATTTCAATACCTAACACCCACCACCCTTCAATTATCAACAATGTTACAAATACCCCCTTCAACATTCAACTAAGTTCACAAAACTCCACAACTTCACTTTTCCATTTCAATCACAACCACCCAAACCCAAACCCTACTTGGATCCCCACCCAAGATCCCAACTCGGCCCGAATCAAACCCGAAACCATCAACCACCCCCACCCGACCCACCACCTTCTTCCCACCATTTCTTTGCCCTATTACCAAGACCCGGACCCGACCCGGATAATTTCACGGGCGCCAGCAACATTCCACGGTCTCCACGTCAGCACCAACGTACATCAACCGCCGGCGCATCACCTCTCCGCCACCGCGCTACTACAAAAGGCGGCGACGGTGGGTCACGTGGTGGATCATGTGGGGTCAACTATGAGTGGTTTGGATATGGGAGAGTTGGGTCACGTGACAAGCTCTGTGGGGTACCACCAGCACGTGGGGATGACGTCAGGGAGTATTGCCACGTGGCATAAAACGGACCGTTTGACTAGAGATTTTCTTGGGTTGACCGGCGATCAGGAGGTTGACCACCATGGTGGGGTCGAGGCTAACGTGAACGTGAGGAGTATGCTAACGTACACCGGGGGTATAGAGATCCCGGCCGATGGAGGGTTCGGTACAAGTGGTTCGGATGCGTGGGGCAACTGTTAA 1410 47.16 MMFSASVYSSSNKTSTSLSDQDAATSTVSPVITSKIHHDQFTPSITLSSISSHIQEHDHLYPSPQKIKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKDEVKKRAYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEETARLSAAAAAAASISIPNTHHPSIINNVTNTPFNIQLSSQNSTTSLFHFNHNHPNPNPTWIPTQDPNSARIKPETINHPHPTHHLLPTISLPYYQDPDPTRIISRAPATFHGLHVSTNVHQPPAHHLSATALLQKAATVGHVVDHVGSTMSGLDMGELGHVTSSVGYHQHVGMTSGSIATWHKTDRLTRDFLGLTGDQEVDHHGGVEANVNVRSMLTYTGGIEIPADGGFGTSGSDAWGNC 469
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00322 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Hean1g00322 469 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 200 237 - -
Hean1g00322 469 Gene3D Classic Zinc Finger 167 231 - -
Hean1g00322 469 FunFam protein indeterminate-domain 5, chloroplastic-like 152 231 - -
Hean1g00322 469 FunFam protein indeterminate-domain 12-like 76 145 - -
Hean1g00322 469 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 173 197 - -
Hean1g00322 469 Gene3D Classic Zinc Finger 76 145 - -
Hean1g00322 469 SUPERFAMILY beta-beta-alpha zinc fingers 96 194 IPR036236 -
Hean1g00322 469 MobiDBLite consensus disorder prediction 1 24 - -
Hean1g00322 469 SMART c2h2final6 97 119 IPR013087 -
Hean1g00322 469 SMART c2h2final6 174 194 IPR013087 -
Hean1g00322 469 PANTHER SERINE-THREONINE-PROTEIN KINASE RIO 55 428 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hean1g00322 469 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Hean1g00322 469 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 135 169 - -
Hean1g00322 469 Pfam Zinc finger, C2H2 type 97 119 IPR013087 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00322 K25870 zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr12:160797209 Hean1g00322 Hean-Chr1:8678626 dispersed
Hean Hean-Chr15:10847291 Hean1g00322 Hean-Chr1:8678626 dispersed
Hean Hean-Chr1:8678626 Hean5g01398 Hean-Chr5:86630819 dispersed
Hean Hean-Chr1:8678626 Hean7g02017 Hean-Chr7:120689883 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean16g01090 . 85 154 IDZ gene family AT3G13810 68.571 2.43e-28 103.0
Hean14g01824 . 7 497 IDZ gene family AT5G66730 55.344 1.22e-163 471.0
Hean14g03151 . 50 242 IDZ gene family AT5G03150 78.238 3.66e-111 335.0
Hean14g03297 . 50 503 IDZ gene family AT5G03150 51.025 1.77e-138 406.0
Hean13g02018 . 49 242 IDZ gene family AT5G03150 77.436 1.23e-110 332.0
Hean13g02662 . 17 339 IDZ gene family AT1G55110 58.754 1.79e-122 364.0
Hean12g03761 . 63 285 IDZ gene family AT4G02670 64.574 1.76e-101 302.0
Hean11g02638 . 3 346 IDZ gene family AT3G50700 52.778 5.08e-113 341.0
Hean11g03586 . 38 427 IDZ gene family AT3G45260 48.276 1.09e-114 343.0
Hean10g00621 . 176 344 IDZ gene family AT3G50700 34.078 2.68e-10 58.9
Hean10g00622 . 51 189 IDZ gene family AT1G03840 82.014 1.43e-85 258.0
Hean9g01072 . 25 344 IDZ gene family AT3G50700 52.025 1.93e-106 322.0
Hean9g03813 . 3 446 IDZ gene family AT3G50700 48.627 4.62e-138 405.0
Hean9g04747 . 17 337 IDZ gene family AT1G55110 57.057 5.60e-116 348.0
Hean7g00581 . 17 339 IDZ gene family AT1G55110 57.831 8.25e-120 358.0
Hean7g01390 . 7 497 IDZ gene family AT5G66730 53.03 1.58e-160 463.0
Hean7g02017 . 50 503 IDZ gene family AT5G03150 49.29 6.72e-139 407.0
Hean7g02248 . 49 270 IDZ gene family AT5G03150 68.376 3.95e-110 332.0
Hean5g01398 . 37 498 IDZ gene family AT1G03840 51.967 3.25e-142 415.0
Hean5g01450 . 109 154 IDZ gene family AT3G13810 65.217 1.59e-17 73.2
Hean3g01142 . 24 368 IDZ gene family AT3G50700 48.333 1.26e-107 323.0
Hean3g02853 . 17 339 IDZ gene family AT1G55110 56.757 6.01e-120 357.0
Hean2g03028 . 49 242 IDZ gene family AT5G03150 80.513 2.37e-114 343.0
Hean1g00322 . 40 374 IDZ gene family AT4G02670 51.699 1.17e-122 362.0
Hean1g02594 . 49 242 IDZ gene family AT5G03150 80.0 2.75e-113 341.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean None None None TF C2H2