AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hean1g00345 | ATGGACTGTCGACCCACTACTTTTAGCGGCACTGAAGGAGCAGTAGGTCTCCTACACTGGTTTGAGAAACTGGAGTCTGTGTTCGAAATGTGTGAATGCCCTGAAGCGCGCAGGGTGAAGTATGCTACTGGTACTCTCGAGGGTTTGGCCCTCACGTGGTGGAATGCTCAAGTGCAGATGTTAGGGTTGGTTGCTGCCAACGCCACCCCATGGGAAACTTTCAAGGAAATGATCAGGGAGGAATACTGCAGTCGTGACGACATTCACAAACTGGAAGATGAGTTCTACAATCTTAAGATGTCGGGGTCAGAGATTGAAGCATACACTAAGAGATCGCATGAGCTTGCCTTGTTGTGTCCTACTATGGTGGATCCTCCGTATAAACGAATTGAACTCTATCTCAAGGGCTTGGTGCCAGAGATCCAAAGTCATGTGACTTCAGCAAACTTGACTACTATCCAGCAGGTTGTACAGTTGGCTCACCGTCTCACTGACCAAGCGGTGGAGCAGAACAAGTTACCAAAGCGTATAGGTGCTGCAACTACTTCTGGTACTTCTAGTGGGGATAAACGGAAATGGGATGGAACTTCAAGTAGGGGTTCAACTTCGGTGCAAACTCAGTCTCAGCAGAGAAAGACGGACGATCACAAGAGCCCCAGTCAGCAATCGTCCGGTGGTCAAAGTCACGGTGGGTACAAGGGGAATCACCCCAAGTGCAATCGTTGCAACCTACACCACAGTGGGCCATGCGCCAGGGGCAACTGTCATCGGTGCAACAAGCCTGGCCATGTTGCCAAGGATTGCAGGAGCGCATACCCCGCCAATCAGAATCATCAGCAACCTCAGCAGAACCAGCGACAGCAACAGGGTAACAACAAAGGGTGCTTTCAATGTGGAGCTGAAGGCCACTTCAAGAAAGATTGTCCCCAACTGAACCAGAACCACAACAACAATCAAGGGAATGGTAACAATGGGAACAACAACAATGGTGCTAGGGGACGAGTGTTCGTGATTGGTCAAGGTGAAGCAAGGAATGATCCCAACGTGGTGACGGGTAAGTTCCTTCTCGACGACTTTTACGTTACAGTCTTATTTGATTCGGGTGCCGATACTAGCTATGTGTCACTAGAAGTTAGTAAGATGCTTAAGCGTATTCCTACACCCCTGAGCGACAAACACACCGTAGAGCTAGCTAATGGTAAGAGTTTGGAAGCCTCACACGTAGTCAAGGGTTGCCAGCTTATTCTCGCTAATCAGACCTTCGCTATCGATCTTATTCCTATTGTCTTGGGTAGTTTCGACGTTGTCATTGGGATGGATTGGTTATCCCAACATCGAGCAGAGATTCTTTGCAACGAGAAGATCGTTCGTATTCCTGGTTTAGGTAGTGAACCTCTCATGATTCGTGGCGACAAGAGAAGTGCTGTTGAGAACATCATCTCTCTTCTTAAGGCTCAGAAATGCTTACGAAAGGGCCACACTGCGATTTTGACTCTAGTTACTGATACCACAGAGAAGGAGAAGAAATTAGAAGATTTTCCCGTTGTACGCGACTATCCTGAGGTATTCCCTGAGGAATTGCCTGGTCTTCCGCCCCATCGCCAAGTCGAGTTTCAGATTGATTTAGCTCCTGGAGCCGCGCCTGTAGCCCGTGCACCTTATCGATTAGCGCCATCAGAGTTGGAAGAACTCTCCACGCAACTACAAGAACTCTTGGATAAGGGTTTTATTCGTCCTAGCTCATCGCCTTGGGGAGCTCCAGTACTTTTTGTGAAGAAGAAGGATGGTACCTTCAGAATGTGTATCGACTATCGTGAACTCAACAAGGTGACTGTGAAGAATCGTTATCCTCTACCGCGCATTGACGACTTGTTCGACCAGTTGCAGGGGTCGAGCTACTATTCAAAGATCGATCTGAGATCGGGATATCACCAGTTGAGAGTTCGAGAAGAGGATGTCTCTAAGACGGCCTTTAGAACTCGTTATGGGCACTATGAGTTTCTGGTCATGCCGTTTGGGCTGACGAACGCACGACTTATTCTGGAACTCCTTCGGAAGGAACAGCTTTACGCGAAATTCTCGAAATGCGACTTCTGGCTTCGAGAGGTCCATTTCCTAGGGCATGTGGTGAACAAGGATGGGATTCACGTTGATCCATCCAAAGTGGAATCTATTAAGAACTGGCCTGCGCCTCGCACACCAAAGGAAATTCGCCAATTTTTGGGATTGGCAGGTTACTACAGGAGATTCATCAAGGATTTTTCTAAGATCGCGCAGCCTCTCACATTGTTAACACAGAAGGGCGTTGTCTATTATTGGGGAAATGCACAAGAGTTAGCTTTTCAGCATCTAAAGGATAGACTTTGTAGTGCACCTATTCTTTCACTGCCAGAGGGCACAGATGATTTTGTGGTTTACTGTGATGCATCAATTCAAGGTCTTGGTTGTGTATTGATGCAACGAGATAAAGTCATAGCCTACGCCTCACGACAACTCAAAGTTCACGAGAAGAACTACACGACGCATGATTTAGAGCTGGGAGCTGTTGTCTTCGCACTTAAACTATGGCGGCATTACCTGTACGGAACCAAGTGCGCCATCTACACCGACCACAGAAGTTTAGAACACATATTCAAGCAGAAGGAACTGAATATGCGGCAGCGACGATGGGTCGAACTGCTGAATGACTATGAGTGCTCTATCAGATATCACCCGGGCAAGGCCAATGTTGTGGCAGACGCCCTCAGTCGAAAGGACACTACGCCTAAGCGCGTAAGAGCTTTACAACTCACGATCCATTCTAGTCTACCTTCGCAAATACGAGCTGCTCAGATAGAAGCACTGAAACCAGAAAACGTTAGAGCTGAAGCTCTACGCGGGTCAAGGCAACGCTTAGAACAGAAGGAAGACGGTGCTTATTATGTGACAGGACGTATCTGGGTCCCACACTATGGCGACTTACGAGAACTTGTGATGGATGAAGCGCACAAATCCCGCTACTCGGTACACCCTGGTTCGGACAAGATGTACCACGATATTAAGACTACGTATTGGTGGCCTAGCATGAAGGCCCACATAGCAACTTATGTCAGCAAGTGTTTGACTTGTGCGCGAGTCAAGACGGAATATCAGAAACCCTCAGGCCTACTCCAACAACCAGAGATACCACAATGGAAATGGGAGCAAATTTCCATGGATTTTGTTACTGGCCTACCTAGATCACAGCGCGGAAACGATACTATCTGGGTGATCGTGGATCGACTCACGAAATCCGCACACTTCTTGGCAATCAAGGAAACAGACAAATTCTCCACTCTGGCGGAGATATACCTCAAGGAAGTTGTTTCGAGGCACGGGGTGCCCACCTCTATCATCTCTGATCGAGATGCACGTTTTACTTCGGAACTGTGGCAGGCAATGCACAAGTCTTTTGGCTCACGTCTAGATATGAGCACAGCGTATCACCCACAGACGGACGGGCAGTCCGAGCGAACTATTCAAACCTTAGAAGACATGCTCCGTGCATGTGTAATCGACTTTGGCAACAGCTGGGAAAGACATCTGCCACTTGTGGAATTTTCATACAATAACAGCTACCACACCAGCATTAAAGCTGCTCCGTTTGAGGCATTGTACGGACGTAAATGCCGGTCACCTCTCTGTTGGGCAGAGGTGGGGGATAGTCAGATCACTGGTCCAGAACATGTGGTAGACACTACTGAGCGGATCGCTCAAATACGACAACGCATGGCGGCCGCTCGTGACCGTCAGAAGGCCTACGCCGATAAGGGCAGGAAACCACTTGAGCTCCAGGTTGGGGAGCGGGTATTACTCAAAGTTTCACCCTGGAAGGGTGTGGTTCGCTTTGGTAAACGCGGCAAACTCAACCCACGGTACGTTGGACCTTTTGAAATCATCGAGAAAATAGGCAAGGTGGCCTACAGACTGAAATTACCAGCAGAACTCGGGGCAGTTCACAACGTTTTCCATGTGTCGAATCTGAAGAAGTGTCTGTCAGATGAGACGCACGTAGTTCCTCTGAGGGAACTCACGATCGACGAACAGTTGAAATTCGTCGAAGAACCTGTCGAAATCACGGACCGGGATGTTAAGGTCCTCAAGAGCACTAGAATACCTCTCGTTCGAGTTCGTTGGAACTCACGTCGCGGCCCAGAGTTCACCTGGGAGCGCGAAGATCGGATGAAACAAAAGTATCCCCAACTGTTTGAGAACAGTACAAACGCTACTGAGGCTGAAGCTACGGAATTTCGGGACGAAATTCCAGATCAACGGGGGGTGGATGTGACACCCCAGGAAAACCGGGAAAACCATGCAACTTGA | 4341 | 48.61 | MDCRPTTFSGTEGAVGLLHWFEKLESVFEMCECPEARRVKYATGTLEGLALTWWNAQVQMLGLVAANATPWETFKEMIREEYCSRDDIHKLEDEFYNLKMSGSEIEAYTKRSHELALLCPTMVDPPYKRIELYLKGLVPEIQSHVTSANLTTIQQVVQLAHRLTDQAVEQNKLPKRIGAATTSGTSSGDKRKWDGTSSRGSTSVQTQSQQRKTDDHKSPSQQSSGGQSHGGYKGNHPKCNRCNLHHSGPCARGNCHRCNKPGHVAKDCRSAYPANQNHQQPQQNQRQQQGNNKGCFQCGAEGHFKKDCPQLNQNHNNNQGNGNNGNNNNGARGRVFVIGQGEARNDPNVVTGKFLLDDFYVTVLFDSGADTSYVSLEVSKMLKRIPTPLSDKHTVELANGKSLEASHVVKGCQLILANQTFAIDLIPIVLGSFDVVIGMDWLSQHRAEILCNEKIVRIPGLGSEPLMIRGDKRSAVENIISLLKAQKCLRKGHTAILTLVTDTTEKEKKLEDFPVVRDYPEVFPEELPGLPPHRQVEFQIDLAPGAAPVARAPYRLAPSELEELSTQLQELLDKGFIRPSSSPWGAPVLFVKKKDGTFRMCIDYRELNKVTVKNRYPLPRIDDLFDQLQGSSYYSKIDLRSGYHQLRVREEDVSKTAFRTRYGHYEFLVMPFGLTNARLILELLRKEQLYAKFSKCDFWLREVHFLGHVVNKDGIHVDPSKVESIKNWPAPRTPKEIRQFLGLAGYYRRFIKDFSKIAQPLTLLTQKGVVYYWGNAQELAFQHLKDRLCSAPILSLPEGTDDFVVYCDASIQGLGCVLMQRDKVIAYASRQLKVHEKNYTTHDLELGAVVFALKLWRHYLYGTKCAIYTDHRSLEHIFKQKELNMRQRRWVELLNDYECSIRYHPGKANVVADALSRKDTTPKRVRALQLTIHSSLPSQIRAAQIEALKPENVRAEALRGSRQRLEQKEDGAYYVTGRIWVPHYGDLRELVMDEAHKSRYSVHPGSDKMYHDIKTTYWWPSMKAHIATYVSKCLTCARVKTEYQKPSGLLQQPEIPQWKWEQISMDFVTGLPRSQRGNDTIWVIVDRLTKSAHFLAIKETDKFSTLAEIYLKEVVSRHGVPTSIISDRDARFTSELWQAMHKSFGSRLDMSTAYHPQTDGQSERTIQTLEDMLRACVIDFGNSWERHLPLVEFSYNNSYHTSIKAAPFEALYGRKCRSPLCWAEVGDSQITGPEHVVDTTERIAQIRQRMAAARDRQKAYADKGRKPLELQVGERVLLKVSPWKGVVRFGKRGKLNPRYVGPFEIIEKIGKVAYRLKLPAELGAVHNVFHVSNLKKCLSDETHVVPLRELTIDEQLKFVEEPVEITDRDVKVLKSTRIPLVRVRWNSRRGPEFTWEREDRMKQKYPQLFENSTNATEAEATEFRDEIPDQRGVDVTPQENRENHAT | 1446 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hean1g00345 | 1446 | Gene3D | - | 806 | 932 | IPR036397 | GO:0003676(InterPro) | |
| Hean1g00345 | 1446 | Coils | Coil | 1236 | 1263 | - | - | |
| Hean1g00345 | 1446 | Gene3D | - | 253 | 313 | - | - | |
| Hean1g00345 | 1446 | Pfam | Zinc knuckle | 254 | 269 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hean1g00345 | 1446 | Pfam | Zinc knuckle | 294 | 310 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hean1g00345 | 1446 | FunFam | Transposon Tf2-6 polyprotein-like Protein | 720 | 809 | - | - | |
| Hean1g00345 | 1446 | MobiDBLite | consensus disorder prediction | 176 | 209 | - | - | |
| Hean1g00345 | 1446 | SUPERFAMILY | Acid proteases | 349 | 449 | IPR021109 | - | |
| Hean1g00345 | 1446 | ProSiteProfiles | Zinc finger CCHC-type profile. | 255 | 270 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hean1g00345 | 1446 | FunFam | Retrovirus-related Pol polyprotein from transposon 17.6-like protein | 802 | 868 | - | - | |
| Hean1g00345 | 1446 | FunFam | Retrovirus-related Pol polyprotein from transposon 297-like Protein | 1051 | 1257 | - | - | |
| Hean1g00345 | 1446 | Gene3D | - | 616 | 643 | IPR043128 | - | |
| Hean1g00345 | 1446 | Gene3D | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 536 | 676 | - | - | |
| Hean1g00345 | 1446 | MobiDBLite | consensus disorder prediction | 1405 | 1446 | - | - | |
| Hean1g00345 | 1446 | SUPERFAMILY | Retrovirus zinc finger-like domains | 276 | 316 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hean1g00345 | 1446 | ProSiteProfiles | Integrase catalytic domain profile. | 1052 | 1215 | IPR001584 | GO:0015074(InterPro) | |
| Hean1g00345 | 1446 | Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) | 591 | 681 | IPR000477 | - | |
| Hean1g00345 | 1446 | SUPERFAMILY | DNA-RNA polymerases | 515 | 903 | IPR043502 | - | |
| Hean1g00345 | 1446 | Pfam | RNase H-like domain found in reverse transcriptase | 801 | 897 | IPR041373 | - | |
| Hean1g00345 | 1446 | CDD | RNase-HI-RT-Ty3 | 804 | 918 | - | - | |
| Hean1g00345 | 1446 | MobiDBLite | consensus disorder prediction | 309 | 332 | - | - | |
| Hean1g00345 | 1446 | SUPERFAMILY | Ribonuclease H-like | 1054 | 1211 | IPR012337 | - | |
| Hean1g00345 | 1446 | ProSiteProfiles | Zinc finger CCHC-type profile. | 295 | 310 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hean1g00345 | 1446 | CDD | retropepsin-like | 353 | 442 | - | - | |
| Hean1g00345 | 1446 | MobiDBLite | consensus disorder prediction | 170 | 232 | - | - | |
| Hean1g00345 | 1446 | PANTHER | YALI0A06105P | 478 | 1377 | - | - | |
| Hean1g00345 | 1446 | Pfam | Ty3 transposon capsid-like protein | 5 | 162 | IPR045358 | - | |
| Hean1g00345 | 1446 | Pfam | Integrase zinc binding domain | 986 | 1041 | IPR041588 | - | |
| Hean1g00345 | 1446 | MobiDBLite | consensus disorder prediction | 1419 | 1446 | - | - | |
| Hean1g00345 | 1446 | SMART | c2hcfinal6 | 294 | 310 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hean1g00345 | 1446 | SMART | c2hcfinal6 | 254 | 270 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hean1g00345 | 1446 | FunFam | Retrovirus-related Pol polyprotein from transposon 17.6-like Protein | 644 | 676 | - | - | |
| Hean1g00345 | 1446 | Gene3D | - | 720 | 805 | IPR043128 | - | |
| Hean1g00345 | 1446 | Gene3D | - | 677 | 716 | IPR043128 | - | |
| Hean1g00345 | 1446 | Gene3D | Acid Proteases | 353 | 465 | IPR021109 | - | |
| Hean1g00345 | 1446 | Pfam | Retroviral aspartyl protease | 332 | 457 | - | - | |
| Hean1g00345 | 1446 | Gene3D | - | 958 | 1039 | - | - | |
| Hean1g00345 | 1446 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 363 | 374 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Hean1g00345 | 1446 | Gene3D | - | 1049 | 1255 | IPR036397 | GO:0003676(InterPro) | |
| Hean1g00345 | 1446 | CDD | RT-LTR | 575 | 710 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hean1g00345 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hean | Hean-Chr1:9750003 | Hean9g04523 | Hean-Chr9:184259812 | dispersed | |
| Hean | Hean-Chr5:117106623 | Hean1g00345 | Hean-Chr1:9750003 | dispersed | |
| Hean | Hean-Chr1:9750003 | Hean7g01577 | Hean-Chr7:105223898 | transposed |