AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00346 ATGAGCTGTACAAGTCCATGGGATTGGAGTTTGGACTCACGAAACAATCAAGAGTTAGTGACTGCTGCAGATTGGGCAAAGAGTATGGTTCCACAGCCATCAATCAGTCCAAGTCAATGGGCTTTGGTATCCAATCAAAGTCAAAGTCTTCAGAACCTTCTGATTAGTGAGAGTGAAACTGGCAGCAACAATCGTCCACCCAAGTTGAACCATATGAACGATTTTCCATCATGGAAAAACCGCTTTCACACATATGTCCAAGGACAAAGCACTGATCTTTGGACGTGTTTCATCAATGCGTTCAATACTAATCTTGAAACTGCTGCGTCAACTTCAGAGGGTTATGCAAATATGCTTGAAAATGACAAGAAGGCTTATGAATTGGAGAAAAAGGCCTTTGCCACACTTACTCAAGCACTAAACAAAGACATCTACCATCAGTTCTCATATTGCAAGACCACGAAAGCTTTGTGGGATGCCTTAGTTGCTAGAGGAGAAGGCAATGCAGCTGCTCGAAAATCTCGGCATGATTTGTTGAAGAAAGAGTTTGAATCCTTTCAGTTTTTGGAAAACGAGACTCTGAATGATATGATCACACGTTTCTATCATTTGATTAGTGAGATGTGTGCTTATGGAGTTGTCGCTACTCAACAAGAAATGGTGAGTAGATTTGCTGACGCCTTACCTCCAAAGTGGAGTTCTTTCATTGAACTGTTGAAACATACTGGAACTCTAGATCAAGTCAACATCTATGAGTTCATTCAAAAGCTGGAACATAAAAATGATGAAGAAATTAGGAAAGCGAGGCGTGCTCCAGCTCCTCAGAATACCGAAATGTATCTTCCAGGATTCGATGTATTGGCAAGATCTGCTGCAGCTCAGCAACAGCAACCTAAGCTGCAGACTGCATTTGTGTCCAATACAAGTTCAAGTTCCTTTCCGTTTTCTCAGTCAACAGCTGCCCCACCACAACCTCAATTCGATCCGAGGTCCTACATTCCTGTTCCAACACAGCCACAACCACAACCTCAACAACAACAACAGCAGGCTCACTATACAAGCAATCCTCAACCTCAACCCCAAAGTCATCACACAATCCGAGTCGACAACTCAAATCTTTCACACCTTAGCATTGAAGTCGCTAAGGAACATATGGAGATTATCAACACCATGGTCAGTGCATACTGTGGTTTGGTAGCAGGTCAGCTTGGAAACATCAACATGACCAATGAAGATTATGATCAGATCGACAAGGAAGAAATGGAGTTGATGGATATTAAATGGGCTTTTGCTAGTGCGGTTAGAAGGGCGAAAGATTTCATGGCACGAACTGGAAGAACTTCGTTGGAAGGAAAGAAAAACACGAAGTATGGGTTTGATATTAATGCCGTCACGTGCTTTAATTGTGGCGAGAAAGGGCACTTTAAACGTGAGTGCACTCGACCAACAAAACACGGCAATCACAACCCTTTCAGAAACCAGACGAATGTGAATGCCCAACAAGAAAACCGTGAAAGGAGGATGGTGGCAGTGAATAACAATCAGGGACAGCCTGGAACTACCAATCACAATCGGGCTTTAGCTGTTCAAGCTGATGAAGGATGTGACTGGTCAGTGCAGTTTGGTGAAGGAGATCAGGGAAGTGGAACTGCATTGTATGCTAAGGTCATCGAGCAGGTTCAAAAAGAAGAATTTTCTGGAAGCGATGACAGTTCTGGTTATTCTGGCAGTTCGGATGAAGAAGGCTCTGTTTCTGGGGATAATCACTCAGAGCCTGATGTGAATGAAGAAGGAGATGATGATATTCAGGAGCTACTGAATGAAGCTGATGAGCTTAAATGTCAGAAATCAATTCTGATTAGGAAGGCTGCTGCTACATCAACGGAAATGGAAAAGCTATTTTCTGAAGATGGAGCTTTTTCTTTTCAAACTGCCTTTATGGCAAACGGCTCAGCCTCTACCAGTCAGGTAACTTCTGAACCACCTGCTCCTAGTATTTGTAAATCATGTGCAGAGATGAAGCTTGAATCAGAAAAGCTTCATAGTCATAACCAGAATTTGGTTGTTGAACTGTCGAAATGCAAAGAGGCAAACATGGCTTTAACCCGGAATGAAAAAGAATTTAAATCTGTAATAGAAACTTTAAAGAAAAATGTGTCCGAGGTTAACAAAGTAGTTTACCACAAGCAAGTGAGTATAAATGAATATATTAACATTGTGGAAGAAACTAAAAAGCAATTAGCCATTGCCCAATGCGAACATGATGCGATCAAACAGAAATTGGATAGTTATTCTAACTCCCAATTTGTGCTTGATCACATCATCGACGTTCAACAACTAAAGGGAAATCAGAAAGGTATAGGGTATAACAAATGTCCGCCCCCCTTGATGAACAACTATACCAAGATGCCTGATGAGGAAGAAATGCCTCGATATGAACCCAGTGTGCCTCTTGATGTTGAGGAGTTTACTACTGGCCTTGGGTTCAAACCGGACAATTCCTCAAACACAACCTCTGAAGAACAAGAAACTTCACCATCCATGAAGCAAAGTCCTCCAATTATCGAGGACTATGAGACATCGGATGATGAATCAGAAGTGGCTGTAAGTGATCAGGATAAATCACTTAGCAAGATGAAAGGAGTAGATATTCCACGAGAGAATCACATCCTTTGTGATCCTGATACTCCTGAGGTTCCATCTGTTGAGAAGCAAGTGATTGATCCTGTCAAGGTTGATAAGACAGGTGTGTCTACTGTTAAAAGCAGTAATGTGTTGTACACTTTGGTTGGAGATAATAAAATCTACTCAGATCATGTTTTTCCAATTAAAAATGTAAATAAATCTTTGATTGATAAAGTCTTTGAAGACAATACAAACAAATTTTTGGGAAAAACACTTCCGGGAATTGTGGTAACACAATGTGATCCAATTCCTAAGGCTGAGATCAGGAAACAGTTTGGTAATCAAAAATCTCCAACCACTCAACAACCTACTGCTTCTAAGGGTAAACAACAACAACGAGCTCCAAAGCCAAAGGCTAAGATTGAATCAAAAGGAGCTCGTTACATGAAGAAAGGAAAAGATGTTAAGTTTGTAGCATCAAAAGGTACAGATAAAATTGAGACTTTTGAAAACAAATCAAACACTGATTTTGTACAACAAGTCAAGATTTTGAAACGTAACAGTGATAACAATTACACCCAACACACAAACGGGTGTGATGAAAGAGCAAGTACCTCAGGTTCTACAGGCTCAACATCTGGTAGTCGATCAAGTTCTCCTAAGTCTGTTGAAAGGAGAACTTGTTTCAAATGTGGAGAAATTGGGCACATTATCAGAAATTGCCCAAATGCTCCAAAGAAGAAATTTGTTGAGAAAACTCCACCTGAAACAGTTCACCCTCAACGTCGGTCAGTTTCACCTAAACAAGATAAACGAACGGTAAAAGAACAAGAATCTAAACAACGACGTAAGAACATAAAAACTGTTGAAAAAGCTTTAAAATCTGAAGTTAAAACAGTGCAAAAGGAACCAAGTGTGTCACAACCTGTAAAACCAGAATCTTCAAAAACTGGTAGGCATAGACAAACTTGGTTACCTAAGTCGGGTGACAATTCAGGGGGAGCAGTTGTTCTTGAAAACCATCAAGAGATAGAGCTTACGTATCGTGATGCCAAGGGACGACCCAAGACCACTAAGGCTTGGGTCCCCATTCTCAACTGA 3726 40.87 MSCTSPWDWSLDSRNNQELVTAADWAKSMVPQPSISPSQWALVSNQSQSLQNLLISESETGSNNRPPKLNHMNDFPSWKNRFHTYVQGQSTDLWTCFINAFNTNLETAASTSEGYANMLENDKKAYELEKKAFATLTQALNKDIYHQFSYCKTTKALWDALVARGEGNAAARKSRHDLLKKEFESFQFLENETLNDMITRFYHLISEMCAYGVVATQQEMVSRFADALPPKWSSFIELLKHTGTLDQVNIYEFIQKLEHKNDEEIRKARRAPAPQNTEMYLPGFDVLARSAAAQQQQPKLQTAFVSNTSSSSFPFSQSTAAPPQPQFDPRSYIPVPTQPQPQPQQQQQQAHYTSNPQPQPQSHHTIRVDNSNLSHLSIEVAKEHMEIINTMVSAYCGLVAGQLGNINMTNEDYDQIDKEEMELMDIKWAFASAVRRAKDFMARTGRTSLEGKKNTKYGFDINAVTCFNCGEKGHFKRECTRPTKHGNHNPFRNQTNVNAQQENRERRMVAVNNNQGQPGTTNHNRALAVQADEGCDWSVQFGEGDQGSGTALYAKVIEQVQKEEFSGSDDSSGYSGSSDEEGSVSGDNHSEPDVNEEGDDDIQELLNEADELKCQKSILIRKAAATSTEMEKLFSEDGAFSFQTAFMANGSASTSQVTSEPPAPSICKSCAEMKLESEKLHSHNQNLVVELSKCKEANMALTRNEKEFKSVIETLKKNVSEVNKVVYHKQVSINEYINIVEETKKQLAIAQCEHDAIKQKLDSYSNSQFVLDHIIDVQQLKGNQKGIGYNKCPPPLMNNYTKMPDEEEMPRYEPSVPLDVEEFTTGLGFKPDNSSNTTSEEQETSPSMKQSPPIIEDYETSDDESEVAVSDQDKSLSKMKGVDIPRENHILCDPDTPEVPSVEKQVIDPVKVDKTGVSTVKSSNVLYTLVGDNKIYSDHVFPIKNVNKSLIDKVFEDNTNKFLGKTLPGIVVTQCDPIPKAEIRKQFGNQKSPTTQQPTASKGKQQQRAPKPKAKIESKGARYMKKGKDVKFVASKGTDKIETFENKSNTDFVQQVKILKRNSDNNYTQHTNGCDERASTSGSTGSTSGSRSSSPKSVERRTCFKCGEIGHIIRNCPNAPKKKFVEKTPPETVHPQRRSVSPKQDKRTVKEQESKQRRKNIKTVEKALKSEVKTVQKEPSVSQPVKPESSKTGRHRQTWLPKSGDNSGGAVVLENHQEIELTYRDAKGRPKTTKAWVPILN 1241
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00346 1241 Coils Coil 733 760 - -
Hean1g00346 1241 SUPERFAMILY Retrovirus zinc finger-like domains 1086 1122 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00346 1241 MobiDBLite consensus disorder prediction 1063 1100 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 983 1021 - -
Hean1g00346 1241 ProSiteProfiles Zinc finger CCHC-type profile. 466 481 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00346 1241 Coils Coil 595 622 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 311 325 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 327 341 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 1120 1159 - -
Hean1g00346 1241 Gene3D - 442 497 - -
Hean1g00346 1241 Gene3D - 1078 1129 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 1063 1099 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 311 365 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 1171 1210 - -
Hean1g00346 1241 SMART c2hcfinal6 465 481 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00346 1241 SMART c2hcfinal6 1102 1118 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00346 1241 MobiDBLite consensus disorder prediction 987 1006 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 566 583 - -
Hean1g00346 1241 Pfam Zinc knuckle 465 480 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00346 1241 Pfam Zinc knuckle 1101 1118 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00346 1241 ProSiteProfiles Zinc finger CCHC-type profile. 1103 1118 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00346 1241 SUPERFAMILY Retrovirus zinc finger-like domains 453 488 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00346 1241 MobiDBLite consensus disorder prediction 825 878 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 828 851 - -
Hean1g00346 1241 PANTHER DUF4219 DOMAIN-CONTAINING PROTEIN-RELATED 83 511 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 342 365 - -
Hean1g00346 1241 Pfam gag-polypeptide of LTR copia-type 129 262 - -
Hean1g00346 1241 MobiDBLite consensus disorder prediction 563 598 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00346 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:155186836 Hean1g00346 Hean-Chr1:9758338 dispersed
Hean Hean-Chr16:156935106 Hean1g00346 Hean-Chr1:9758338 dispersed
Hean Hean-Chr16:160367591 Hean1g00346 Hean-Chr1:9758338 dispersed
Hean Hean-Chr1:9758338 Hean9g01046 Hean-Chr9:56345191 dispersed
Hean Hean-Chr2:146717577 Hean1g00346 Hean-Chr1:9758338 dispersed
Hean Hean-Chr1:9758338 Hean13g03870 Hean-Chr13:157289831 transposed