AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00354 ATGTCGAAGAATTTACGGTGGATCGGTTTTGTTTTTGTTATCTTATACTTCTTATCATCCCCTTGTGGGGTGTTTGCTATTGATGATTTCAGACAAGCATTTCCAATCGTAGAACCGGATCCTGGTCATACAAAACTTCGTCTTTCTAGTGAAGGACTGGAGGCTATTAGGAGAATAACCAATCCTATTGCAGCCGTTGCCGTGATTGGTCCATATCGATCTGGAAAGTCCTTTACGCTTAACCAACTTCTCTCACTTTCTTGTTATGAAGGTTTTGGTGTTGGCCACATGCGTGACACAAAAACGAAAGGAATATGGGTATGGGGAACTCCAGTTGAAATGGATATTAATGGGGTGAAAACGTCTGTATTTTATCTCGATACCGAGGGATTTGAAAGCGTAGGGAAATCAAACGTCTACGATGACAGAATATTTGCTCTTGCGACAGTTTTGAGCTCGGTCCTTATCTACAACTTGCCTGAGACGATACGCGAAGCTGATATATCGCGATTGTCATTTGCCGTTGAGCTTGCCGAAGAGTTTTACGGAAGAGTCGAGGGGCAAGATGTGGCGTTTGAACCGGCAAAACTACTGTGGCTTATACAACGTGACTTTTTACAGGGGAAGTCGGTAAAAGAAATGGTGGATGAAGCTCTACGACATGTTCCTAACGCTAATGGTGACAAAAATATTGATCAGGTTAACCAGATTCGAGACTCACTAGCTATTATGGGTGACAATAGCACAGCATTCAGCTTACCACAACCACATCTCCAAAGGACAAAGCTTTGCGACTTGAAAGACGAGGAGCTCGATCAGAGTTACGTTAGAAAGCGAGAACAGTTGAAAGAAGTTGTTAAATCTGTTATTCGTCCAAAGATTGTACAGGGCAAATCACTTAACGGGAAGGAGTTTGTAGCTTTTCTTGAAAAGATTTTGGAAGCTTTAAACAAGGGTGAGATTCCATCGACAGGGTCTCTTGTTGAGATATTTAACAAAAAAATATTGGAGAAATGTTTGAAGATATACGAGGATAGTATGACAAAAGTGACTTTACCGATTTCCGAAGAATCATTACAATCCATCCACGAAGCTTCTAGAACCGAATCTTTGAAATCTTTCGATGAACAACATTTCGGTCGTCACCATGCCAAAAAATCGGTTGAAGCACTTGATGAAGATATTGCAAAGATGTTTAAGAATTTTGTTATGGCAAACCAATATCAGTCGTCGAAATTGTGTGAGGAACTTTATACATTGTGTGAGGACAAAATGGACCAGCTTCAAGTACTCCGACTACCGTCAATGGCTAAGTTCAATGCCGGTTTTCTTCAATGCAACCAAAGTTTTGAAAAAGTGTGCGTCGGGCCTTCTAAAACCACATATGAGCAACGAATGGTGAAGATGATGGAAAAGTCAAAGTCTTTGTTTATAAAGGAATATAATCACAAATTATTTAACTGGTTGGTGGCCTTTTCGCTTGTCATGGTGATTGTGGGCCGTTTTGTCATAAAGTTCATTTTGCTTGAAATCGGAGCTTGGATACTTTTTATATTTTTGGAGACGTACACGCGGATGTTTTGGTCACCTGAGTCTCTTTATTACAACCCCGTTTGGCATGGCATTGTAGCAACATGGGAAACACTTGTTTACAGCCCGATTCTTGATTTAGACAGATGGGCGATACAAATCGGATTCATGGCATCAATATTGTTAATTTACTGGCGGTGTTTCAGAAGAAGGAAACACGGGTCCCACTCTTTGTTACCGTTGTACGCAAACAATTCAAAAGTTCGGGATAGATCAGAATAG 1812 40.67 MSKNLRWIGFVFVILYFLSSPCGVFAIDDFRQAFPIVEPDPGHTKLRLSSEGLEAIRRITNPIAAVAVIGPYRSGKSFTLNQLLSLSCYEGFGVGHMRDTKTKGIWVWGTPVEMDINGVKTSVFYLDTEGFESVGKSNVYDDRIFALATVLSSVLIYNLPETIREADISRLSFAVELAEEFYGRVEGQDVAFEPAKLLWLIQRDFLQGKSVKEMVDEALRHVPNANGDKNIDQVNQIRDSLAIMGDNSTAFSLPQPHLQRTKLCDLKDEELDQSYVRKREQLKEVVKSVIRPKIVQGKSLNGKEFVAFLEKILEALNKGEIPSTGSLVEIFNKKILEKCLKIYEDSMTKVTLPISEESLQSIHEASRTESLKSFDEQHFGRHHAKKSVEALDEDIAKMFKNFVMANQYQSSKLCEELYTLCEDKMDQLQVLRLPSMAKFNAGFLQCNQSFEKVCVGPSKTTYEQRMVKMMEKSKSLFIKEYNHKLFNWLVAFSLVMVIVGRFVIKFILLEIGAWILFIFLETYTRMFWSPESLYYNPVWHGIVATWETLVYSPILDLDRWAIQIGFMASILLIYWRCFRRRKHGSHSLLPLYANNSKVRDRSE 603
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00354 603 FunFam Guanylate-binding family protein 297 429 - -
Hean1g00354 603 Pfam Guanylate-binding protein, N-terminal domain 45 283 IPR015894 GO:0003924(InterPro)|GO:0005525(InterPro)
Hean1g00354 603 PANTHER GUANYLATE BINDING PROTEIN 33 554 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Hean1g00354 603 Pfam Guanylate-binding protein, C-terminal domain 297 418 IPR003191 GO:0003924(InterPro)|GO:0005525(InterPro)
Hean1g00354 603 CDD GBP 57 286 - -
Hean1g00354 603 FunFam Guanylate-binding family protein 28 296 - -
Hean1g00354 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 293 IPR027417 -
Hean1g00354 603 Gene3D - 297 430 - -
Hean1g00354 603 Gene3D - 29 296 IPR027417 -
Hean1g00354 603 ProSiteProfiles GB1-RHD3-type guanine nucleotide-binding (G) domain profile. 60 180 IPR030386 GO:0005525(InterPro)
Hean1g00354 603 SUPERFAMILY Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 296 517 IPR036543 GO:0003924(InterPro)|GO:0005525(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00354 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
402257 Hean11g02472 Hean1g00354
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:10014192 Hean4g00085 Hean-Chr4:1882537 dispersed
Hean Hean-Chr2:84447705 Hean1g00354 Hean-Chr1:10014192 transposed
Hean Hean-Chr1:10014192 Hean11g02472 Hean-Chr11:107899327 wgd