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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00380 ATGCTCCATGTTCTTAATGCACAATCAAGAATGTCATCATCAGGCTGTAAAGGAAAGGATTCATGGCCCGAGCTTGTTGGGGCAAAAGGAGAAGCGGCAGCGACTACAATTGAGAAAGAGAATCCACTGGTTAATGCTATCGTGATATTGGAAGGAACTGCGACCACTAGGGACTTCAGGTGCGATCGTGTGTGGGTGTGGGTGAATCATAAGGGAGTGGTGACTCGAACGCCTATCATTACTTGA 246 47.15 MLHVLNAQSRMSSSGCKGKDSWPELVGAKGEAAATTIEKENPLVNAIVILEGTATTRDFRCDRVWVWVNHKGVVTRTPIIT 81
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00380 81 PRINTS Potato inhibitor I signature 21 34 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hean1g00380 81 PRINTS Potato inhibitor I signature 46 57 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hean1g00380 81 PRINTS Potato inhibitor I signature 58 68 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hean1g00380 81 Pfam Potato inhibitor I family 19 80 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hean1g00380 81 ProSitePatterns Potato inhibitor I family signature. 22 33 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hean1g00380 81 Gene3D Trypsin Inhibitor V, subunit A 5 80 - -
Hean1g00380 81 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 12 80 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hean1g00380 81 SUPERFAMILY CI-2 family of serine protease inhibitors 15 80 IPR036354 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00380 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:10927207 Hean1g00388 Hean-Chr1:11210482 dispersed
Hean Hean-Chr1:10927207 Hean1g00382 Hean-Chr1:10987330 proximal
Hean Hean-Chr1:10889034 Hean1g00380 Hean-Chr1:10927207 tandem