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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00406 ATGGCATCGATCTCCACCTCCCTTCCAATCTCATCACCCTCCTTGTCTCTGCTCCAAAAGCCAACGATCACTGCCCGCGGTTCTCCAGTTCTTAGATTGCCATCGATGAGCAAGATGGGGAAAGTGAGATGTTCCGTGGAAGGTAAGCCCAATGTCATATCCGACGATTTCTTTGTACCAGGAAAGAATTCATGGCCAGAGCTTGTAGGGGAAAAAGGAGAAGTGGCAAAAGGGATAATTGAGAAAGAAAATCCACTAGTCAATGCTATCATAATATCTGAAAATTCTGCCATGATTTCTGACCTTGTGTCCAACCGTGTGTGGGTTGTGGTGAATGCTGAGGGATTGGTGATTAAAACACCCGTCATTGGCTAG 375 46.13 MASISTSLPISSPSLSLLQKPTITARGSPVLRLPSMSKMGKVRCSVEGKPNVISDDFFVPGKNSWPELVGEKGEVAKGIIEKENPLVNAIIISENSAMISDLVSNRVWVVVNAEGLVIKTPVIG 124
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00406 124 SUPERFAMILY CI-2 family of serine protease inhibitors 58 124 IPR036354 -
Hean1g00406 124 ProSitePatterns Potato inhibitor I family signature. 65 76 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hean1g00406 124 Gene3D Trypsin Inhibitor V, subunit A 57 123 - -
Hean1g00406 124 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 61 124 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hean1g00406 124 Pfam Potato inhibitor I family 62 124 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00406 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:11068549 Hean1g00406 Hean-Chr1:11423123 dispersed
Hean Hean-Chr1:11406805 Hean1g00406 Hean-Chr1:11423123 dispersed
Hean Hean-Chr1:11423123 Hean1g01756 Hean-Chr1:84093529 dispersed
Hean Hean-Chr1:11423123 Hean1g00408 Hean-Chr1:11447334 proximal
Hean Hean-Chr1:11412416 Hean1g00406 Hean-Chr1:11423123 tandem