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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00427 ATGAAGAAAAAGCTCGATACCCGTTTCCCTGCTGCCCGGATTAAAAAGATAATGCAAGCTGATGAGGATGTTGGAAAGATTGCCATGGCCGTGCCAGTATTAGTTTCCAAAGCATTGGAATTGTTCTTGCAAGATCTTTGTGATCGTACATATGACATCACTCTTCGTAGAGGAGCAAAGACTGTTAACTCACTTCATTTGAAGCATTGTGTTCAAAGCTACAATGTGTATGATTTTCTGAGGGAAGTTGTCAGCAAGGTCCCTGACTATGGCCACTCAGAAGCTGGTGGTGATGAGCGTACAATGGCAAAGAGAAAGAAAGCTTCTGCTGATGAAATGAATGAAAGTGATGATGAATTGAAGAAAAATCGGATGAATGAAGGCGGACATACAAGCAGCAGTGGGAGAGGCAGAGGACGGGGTAGAGGAAGAGGCCGTGGCAGAGGTAGAGTATCTGCAGAACGAGATCCTCCCCCCACTGAACCTGAATCTGTTCATCACAGCAGCAAGCCCACAACCGACATCCACTCGGAGTCCATCACTGCAGTCGACGACGTTGTTCCAAGCAGAGGCTTCGATCTCAATGCTGGCCTTGATGAGAATACAGATAAAGTGTCTGCTGCTGCATCAGATGGTGCTGCGCCACCACAACCACCACCACCAGCAGTGGTTGCAGAACCTAGTGAAGTTGCAAATAATGAGTACCCTGGGTGGTCAGTTTCAGAAATCGACAGGATGGCCATTGACCCTCATCTTGCACACGCCAACTCAAGGTTGGATGAGGAAGATGAAGACTATGATGAAGAGTAA 810 47.16 MKKKLDTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVYDFLREVVSKVPDYGHSEAGGDERTMAKRKKASADEMNESDDELKKNRMNEGGHTSSSGRGRGRGRGRGRGRGRVSAERDPPPTEPESVHHSSKPTTDIHSESITAVDDVVPSRGFDLNAGLDENTDKVSAAASDGAAPPQPPPPAVVAEPSEVANNEYPGWSVSEIDRMAIDPHLAHANSRLDEEDEDYDEE 269
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00427 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 174 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Hean1g00427 269 MobiDBLite consensus disorder prediction 89 126 - -
Hean1g00427 269 FunFam dr1-associated corepressor homolog 1 86 - -
Hean1g00427 269 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 8 71 IPR003958 -
Hean1g00427 269 MobiDBLite consensus disorder prediction 89 225 - -
Hean1g00427 269 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Hean1g00427 269 SUPERFAMILY Histone-fold 3 88 IPR009072 GO:0046982(InterPro)
Hean1g00427 269 MobiDBLite consensus disorder prediction 147 173 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00427 K21752 Dr1-associated corepressor
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Event-related genes

Select Gene_1 Gene_2 Event_name
402315 Hean11g02976 Hean1g00427
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:140287210 Hean1g00427 Hean-Chr1:12366523 dispersed
Hean Hean-Chr17:162012074 Hean1g00427 Hean-Chr1:12366523 dispersed
Hean Hean-Chr1:12366523 Hean3g04061 Hean-Chr3:172104397 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g03791 . 1 230 CCAAT-HAP5 Transcription Factor family AT3G12480 53.814 1.72e-69 216.0
Hean14g02429 . 1 219 CCAAT-HAP5 Transcription Factor family AT1G08970 58.13 1.19e-79 238.0
Hean13g01774 . 80 152 CCAAT-HAP5 Transcription Factor family AT1G54830 87.671 4.16e-43 137.0
Hean13g03367 WGDA 69 146 CCAAT-HAP5 Transcription Factor family AT1G54830 65.823 1.29e-32 112.0
Hean12g00596 WGDA 40 219 CCAAT-HAP5 Transcription Factor family AT1G08970 73.404 6.10e-83 246.0
Hean11g02976 WGDA 1 140 CCAAT-HAP5 Transcription Factor family AT3G12480 68.571 1.29e-63 200.0
Hean10g03256 WGDA 7 219 CCAAT-HAP5 Transcription Factor family AT1G08970 63.203 1.89e-81 241.0
Hean9g00054 . 7 122 CCAAT-HAP5 Transcription Factor family AT5G43250 55.372 1.65e-41 132.0
Hean9g01080 . 1 219 CCAAT-HAP5 Transcription Factor family AT1G08970 60.976 5.71e-83 246.0
Hean9g02387 . 7 122 CCAAT-HAP5 Transcription Factor family AT5G43250 52.066 3.80e-39 126.0
Hean8g03135 WGDA 46 224 CCAAT-HAP5 Transcription Factor family AT5G63470 78.689 1.05e-91 268.0
Hean5g02937 WGDA 45 232 CCAAT-HAP5 Transcription Factor family AT5G63470 76.72 2.36e-86 254.0
Hean3g03631 WGDA 69 146 CCAAT-HAP5 Transcription Factor family AT1G54830 67.089 7.88e-34 115.0
Hean3g04061 . 1 282 CCAAT-HAP5 Transcription Factor family AT3G12480 46.599 2.94e-62 196.0
Hean1g00427 WGDA 1 140 CCAAT-HAP5 Transcription Factor family AT3G12480 72.143 1.65e-68 212.0
Hean1g02586 . 77 199 CCAAT-HAP5 Transcription Factor family AT1G07980 44.697 2.09e-29 106.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean CBFD_NFYB_HMF 1.5e-19 CL0012 TF NF-YC