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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00431 ATGTTTGGAAAAATCCCAACAGTTTGCCACTGTGACTACAATCGGACAGAACAAAAGGCGATCGCAAGTAAAAACTACACAACTGAAGAAAATGGTGTCAAAGGTGAAAGTGTTAAGTGCCACAATTTGCATTCATGGTTCGGTGATAAGGGGCTCTCAGTGCTTGCCCGGTTGGAAGGCCACTCGAAGGATGTAACTGGGATTGTCTTCCCATCTGGATCCAATAATCTTTATTGCGGTAGCAAGGACAAATCTCTTCGAGTTTGGGATTGTAATAGTGGACAGTGTGGGACTTTGGTTGAAGAAGGTCCATGGATCTTTGCTGGGCTTCATGATATGATCAAGGCTTGGAATCATGAAACGCAAATTTCCGTAGTCATTCGAGCAAGTGGTGGAATGGTTAACGCAATTACTATGTTTGAAGACGTTCTTTTTGCTGGGACAAAGGTGAAAATCGTATCAACCTTTTCACTGATAGTGGTTCCTTTTTCGTTGAAGGTATGGGATGTTGAGTCCCTAGAGTGCAAACATGTTCTAAATGGACATAGTGGCGATGTGACAAGTGTTATATGTTGGGATCAGTATTTGTTTTCTGGTTCGTTGGATAAAACAATCAAGGTTTGGGGTGCCACTGCAAGCGGCAACATTGAGGAAGTTTATTGA 663 42.53 MFGKIPTVCHCDYNRTEQKAIASKNYTTEENGVKGESVKCHNLHSWFGDKGLSVLARLEGHSKDVTGIVFPSGSNNLYCGSKDKSLRVWDCNSGQCGTLVEEGPWIFAGLHDMIKAWNHETQISVVIRASGGMVNAITMFEDVLFAGTKVKIVSTFSLIVVPFSLKVWDVESLECKHVLNGHSGDVTSVICWDQYLFSGSLDKTIKVWGATASGNIEEVY 220
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00431 220 Gene3D - 161 219 IPR015943 GO:0005515(InterPro)
Hean1g00431 220 Pfam WD domain, G-beta repeat 54 90 IPR001680 GO:0005515(InterPro)
Hean1g00431 220 Pfam WD domain, G-beta repeat 174 208 IPR001680 GO:0005515(InterPro)
Hean1g00431 220 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515(InterPro)
Hean1g00431 220 Gene3D - 32 159 IPR015943 GO:0005515(InterPro)
Hean1g00431 220 PANTHER - 165 220 - -
Hean1g00431 220 SMART WD40-4 51 90 IPR001680 GO:0005515(InterPro)
Hean1g00431 220 SMART WD40-4 172 209 IPR001680 GO:0005515(InterPro)
Hean1g00431 220 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Hean1g00431 220 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 218 IPR001680 GO:0005515(InterPro)
Hean1g00431 220 SUPERFAMILY WD40 repeat-like 53 210 IPR036322 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00431 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr17:189727131 Hean1g00431 Hean-Chr1:12422691 dispersed
Hean Hean-Chr1:12422691 Hean5g01482 Hean-Chr5:91232359 dispersed