AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00443 ATGACTTCCCTACAAAACAATCAAGAAACTATGCAAACCAACTATGAGGTCCCTGCGTCGGGCCTCCAGAGCAATGCTCACCCACAGTGTAATGGGACTCCTATGGAATCCAAAAACATTCTAGAAATAGATCCAAACGAATTGCTAATTGAACCGGAGAAAAAGCCAGACTACACTTTGCATCATCATCCTGCAGCTGACATAAAAAATGAAAACTTGAACAATATCCAAGGCCAGTTTTACCCTTTCTTCCAGTATGCTCCATTTACCCTGTTTCCTCCCTGTGACTATCAGCATCAAGAGTTCCATTATTTTGTGGTTATTGATTTTGAGGCTACATGCGATAAGGAAAGAAATCCTCATCCTCAAGAGATCATTGAGTTTCCCTCGGTTATAGTGAGTAGTTTCACTGGTCAACTGGAAGCTTGTTTCCAAACATATGTTCGTCCAACATGCAATCAGCTCTTAACTGACTTTTGCAAGGATTTGACCGGTATCCATCAATTTCAGGTGGACAGAGGAGTTACTCTTAGTGAAGCACTTGTTCGACATGACAAATGGCTGGAGATGAAGGGGATAAAGAATGCCAACTTTGCTGTGGTTACATGGTCAAACTGGGACTGTAGAGTCATGCTGGAATCAGAATGCAGATTCAAGAAAATTCGTAAGCCTTGTTATTTTAACCGATGGATCAACTTAAAAGCAGCATTCTGTGAGGTGTTTGGTGTGGCAAAATGCAATTTGAAGGAGGCAGTGCAGCTGGCGGGTCTGTCATGGCAGGGTAGAGCTCACTGTGGTTTAGATGATGCCAGGAACACCGCCCGCCTACTTGCTCTGATGATGCACAGGGGTTTCAAGTTCTCAATCACCAATTCTTTGATGTGCCATCCTGATCTCACTTGGAAACCACCACCACCTGGACATCTGCATTTCCTTCCGCTCTTTCACCATCCTTGCTGTTTCTGTGGGGTCAAAAGCAGTAAAGGAATGGTTCGCAAACCAGGTCCCAAACAAGGCAGCTGCTTCTTTGGTTGCGGGAATTGGACTTCTGCTAGAGGCGCACGTTGCCACTACTTCCAATGGGCTTGA 1089 44.72 MTSLQNNQETMQTNYEVPASGLQSNAHPQCNGTPMESKNILEIDPNELLIEPEKKPDYTLHHHPAADIKNENLNNIQGQFYPFFQYAPFTLFPPCDYQHQEFHYFVVIDFEATCDKERNPHPQEIIEFPSVIVSSFTGQLEACFQTYVRPTCNQLLTDFCKDLTGIHQFQVDRGVTLSEALVRHDKWLEMKGIKNANFAVVTWSNWDCRVMLESECRFKKIRKPCYFNRWINLKAAFCEVFGVAKCNLKEAVQLAGLSWQGRAHCGLDDARNTARLLALMMHRGFKFSITNSLMCHPDLTWKPPPPGHLHFLPLFHHPCCFCGVKSSKGMVRKPGPKQGSCFFGCGNWTSARGARCHYFQWA 362
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00443 362 FunFam Exonuclease domain-containing protein 1 96 303 - -
Hean1g00443 362 Gene3D - 95 302 IPR036397 GO:0003676(InterPro)
Hean1g00443 362 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 97 338 IPR051274 -
Hean1g00443 362 SMART exoiiiendus 104 286 IPR013520 -
Hean1g00443 362 ProSiteProfiles Zinc finger GRF-type profile. 320 362 IPR010666 GO:0008270(InterPro)
Hean1g00443 362 Pfam Exonuclease 106 277 IPR013520 -
Hean1g00443 362 SUPERFAMILY Ribonuclease H-like 102 291 IPR012337 -
Hean1g00443 362 CDD ERI-1-3'hExo-like 105 281 IPR047201 GO:0000175(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00443 K18417 ERI1 exoribonuclease 2 [EC:3.1.-.-]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
402318 Hean11g02986 Hean1g00443
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:140541053 Hean1g00443 Hean-Chr1:12958576 dispersed