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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00456 ATGTGTTTCTTTGTTGGGAACGATTTTCTACCACATATGCCCACTTTAGAAATTCGCGAGAGTGCAATAAATTTACTTTTATCCGTATATAAAAAGGAGTTCAGGACCTTGAACGGGTATCTAACTAATGGAAGCAAGAGACAAGCCGAAAGGATAAAACGAGACAAAGCTCAGAAAACAAGAGGAGATGACGCTAGACCAGAATTAGAACCTGAATCATTAGTTGCAGTAGGGCGGTTTCATGGGTCACAACTTGCTTCTGGGCCTTCACCATCACCATACCAATCTAAGGGTGACTCGCGAGCACAAAAACTTGCGCGCAGGTCTTCCGGGTCTACTGTTGGTGCTGCCATCATTGAAGCTGAGAGTAGTCTTGAAAGAGATGATATAAAACTCGGAGTGCCTGGTTGGAAAGAGAGGTACTATGAAGAGAAGTTTTCTACAAATTCCCTAGAAGAACTCGAGGAAATACGGAGAGATGTTGTAAGATTTTAA 495 42.42 MCFFVGNDFLPHMPTLEIRESAINLLLSVYKKEFRTLNGYLTNGSKRQAERIKRDKAQKTRGDDARPELEPESLVAVGRFHGSQLASGPSPSPYQSKGDSRAQKLARRSSGSTVGAAIIEAESSLERDDIKLGVPGWKERYYEEKFSTNSLEELEEIRRDVVRF 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00456 164 MobiDBLite consensus disorder prediction 47 70 - -
Hean1g00456 164 Pfam Xrn1 helical domain 49 163 IPR041412 -
Hean1g00456 164 Pfam Xrn1 helical domain 1 53 IPR041412 -
Hean1g00456 164 MobiDBLite consensus disorder prediction 85 110 - -
Hean1g00456 164 PANTHER 5'->3' EXORIBONUCLEASE 1 161 IPR027073 -
Hean1g00456 164 MobiDBLite consensus disorder prediction 47 112 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00456 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:15223533 Hean3g04247 Hean-Chr3:174420510 dispersed
Hean Hean-Chr1:15223533 Hean12g03096 Hean-Chr12:132520749 transposed