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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00460 ATGCATTCATTCGGATACAGAGCGAACGCTTTGCTGACTTTTGCTATTACGATACTTGCCGTAATGTGCGCCATCGCATCCCTCTCCGACAATTTCACTTCTCCCCATCCCTCCTCCAAAGTCCAGGTTCTAAACATCAATTGGTTCCGGAATAAGCCAGATGGCGATGATGAGGTCAGCATGACGATGAACATATCAGCAGATTTGCAGTCATTGTTTACATGGAATACAAAACAGGTTTTCGTTTTTCTAGCTGCTGAGTATGAAACCCCACAGAATTCTTTAAATCAGGTTTCCTTGTGGGATGGTATTATTCCTGCCAAAGAGCATGCAAAGTTCTACATCCATACAACCAACAAATACCGATTTGTAGATCAGGGAAGTAATCTCCGAGGAAGAGATTTCAACATGACATTGCATTGGCATGTGATGCCCAAAACTGGGAAGATGTTTGCTGACAAAATAGTCATGACCGGGTTCCGCTTACCTCAATCATATAGATGA 504 42.86 MHSFGYRANALLTFAITILAVMCAIASLSDNFTSPHPSSKVQVLNINWFRNKPDGDDEVSMTMNISADLQSLFTWNTKQVFVFLAAEYETPQNSLNQVSLWDGIIPAKEHAKFYIHTTNKYRFVDQGSNLRGRDFNMTLHWHVMPKTGKMFADKIVMTGFRLPQSYR 167
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00460 167 PIRSF SPC3 1 167 IPR007653 GO:0005787(InterPro)|GO:0006465(InterPro)|GO:0016020(InterPro)
Hean1g00460 167 Pfam Signal peptidase subunit 1 164 IPR007653 GO:0005787(InterPro)|GO:0006465(InterPro)|GO:0016020(InterPro)
Hean1g00460 167 PANTHER MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22-23 1 167 IPR007653 GO:0005787(PANTHER)|GO:0005787(InterPro)|GO:0006465(PANTHER)|GO:0006465(InterPro)|GO:0016020(InterPro)|GO:0045047(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00460 K12948 signal peptidase complex subunit 3 [EC:3.4.-.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:15935804 Hean2g02251 Hean-Chr2:139100161 dispersed
Hean Hean-Chr1:15935804 Hean15g02804 Hean-Chr15:92052059 transposed
Hean Hean-Chr1:15935804 Hean14g02431 Hean-Chr14:128832562 transposed